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  5. Solyc11g005840.2.1

Solyc11g005840.2.1 (Solyc11g005840)


Aliases : Solyc11g005840

Description : no hits & (original description: none)


Gene families : OG0001578 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001578_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g005840.2.1
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
Ala_g17833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36964 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g35720 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g21934 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39865.t1 Aspi01Gene39865 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.29G009200.1 Ceric.29G009200 not classified & original description: pacid=50624594... 0.04 OrthoFinder output from all 47 species
Ceric.39G004500.1 Ceric.39G004500 not classified & original description: pacid=50583341... 0.04 OrthoFinder output from all 47 species
Dac_g29277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33348 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g45760 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os12g08900.1 LOC_Os12g08900 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Lfl_g09304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022604 No alias not classified & original description: CDS=40-3546 0.03 OrthoFinder output from all 47 species
Smo128002 No alias No description available 0.03 OrthoFinder output from all 47 species
Smo128027 No alias No description available 0.03 OrthoFinder output from all 47 species
Zm00001e021339_P001 Zm00001e021339 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR000192 Aminotrans_V_dom 104 427
No external refs found!