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  5. Solyc11g005450.3.1

Solyc11g005450.3.1 (Solyc11g005450)


Aliases : Solyc11g005450

Description : Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana (sp|f4kfc7|md26c_arath : 231.0)


Gene families : OG0000390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g005450.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00137160 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Adi_g113666 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Aev_g03308 No alias component *(MED26) of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Ceric.14G036300.1 Ceric.14G036300 component *(MED26) of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Ceric.30G069800.1 Ceric.30G069800 not classified & original description: pacid=50608596... 0.03 OrthoFinder output from all 47 species
Ceric.32G000300.1 Ceric.32G000300 not classified & original description: pacid=50598005... 0.04 OrthoFinder output from all 47 species
Dcu_g02986 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Dcu_g19305 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Dcu_g48948 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
GSVIVT01025776001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 OrthoFinder output from all 47 species
LOC_Os01g17990.1 LOC_Os01g17990 component MED26 of MEDIATOR transcription co-activator complex 0.03 OrthoFinder output from all 47 species
LOC_Os05g34210.1 LOC_Os05g34210 component MED26 of MEDIATOR transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Len_g01212 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g24446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g31661 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Lfl_g01694 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Pnu_g08667 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005285 No alias not classified & original description: CDS=297-1337 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005713 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008019 No alias not classified & original description: CDS=1-1290 0.03 OrthoFinder output from all 47 species
Sam_g13021 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027059_P003 Zm00001e027059 component MED26 of MEDIATOR transcription co-activator complex 0.06 OrthoFinder output from all 47 species
Zm00001e038156_P001 Zm00001e038156 component MED26 of MEDIATOR transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Zm00001e039442_P001 Zm00001e039442 Probable mediator of RNA polymerase II transcription... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 138 186
No external refs found!