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  5. Solyc11g005220.2.1

Solyc11g005220.2.1 (Solyc11g005220)


Aliases : Solyc11g005220

Description : small subunit sigma of AP-1 trans-Golgi network cargo adaptor complex


Gene families : OG0004438 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004438_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g005220.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00186170 AP19,... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 OrthoFinder output from all 47 species
AT4G35410 No alias Clathrin adaptor complex small chain family protein 0.05 OrthoFinder output from all 47 species
Adi_g025276 AP19 small subunit sigma of AP-3 Golgi to vacuole cargo... 0.02 OrthoFinder output from all 47 species
Ala_g00382 AP19 small subunit sigma of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
Als_g42087 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Aob_g34008 AP19 small subunit sigma of AP-3 Golgi to vacuole cargo... 0.02 OrthoFinder output from all 47 species
Aop_g40433 AP19 small subunit sigma of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
Azfi_s0343.g065719 AP19 small subunit sigma of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001003.32 AP19 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Cre09.g394100 AP19 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.09 OrthoFinder output from all 47 species
Dac_g17595 AP19 small subunit sigma of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
Ehy_g01910 No alias small subunit sigma of AP-3 Golgi to vacuole cargo... 0.06 OrthoFinder output from all 47 species
GSVIVT01013725001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
GSVIVT01028912001 AP19 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.07 OrthoFinder output from all 47 species
Gb_30890 No alias small subunit sigma of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
LOC_Os03g57040.1 AP19, LOC_Os03g57040 small subunit sigma of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
Lfl_g17082 AP19 small subunit sigma of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
MA_130401g0010 AP19 small subunit sigma of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Mp1g27490.1 AP19 small subunit sigma of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
Nbi_g10067 AP19 small subunit sigma of AP-3 Golgi to vacuole cargo... 0.04 OrthoFinder output from all 47 species
Ore_g29733 AP19 small subunit sigma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Ppi_g15365 AP19 small subunit sigma of AP-3 Golgi to vacuole cargo... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011004 AP19 small subunit sigma of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
Sam_g49420 No alias small subunit sigma of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
Tin_g24633 AP19 small subunit sigma of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
Zm00001e005895_P003 AP19, Zm00001e005895 small subunit sigma of AP-1 trans-Golgi network cargo... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004615 phosphomannomutase activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0008154 actin polymerization or depolymerization IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
BP GO:0009225 nucleotide-sugar metabolic process IEP HCCA
BP GO:0009226 nucleotide-sugar biosynthetic process IEP HCCA
BP GO:0009298 GDP-mannose biosynthetic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019673 GDP-mannose metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030008 TRAPP complex IEP HCCA
BP GO:0030041 actin filament polymerization IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
CC GO:0034998 oligosaccharyltransferase I complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0120009 intermembrane lipid transfer IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR022775 AP_mu_sigma_su 1 140
No external refs found!