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  5. Solyc11g005170.2.1

Solyc11g005170.2.1 (Solyc11g005170)


Aliases : Solyc11g005170

Description : no hits & (original description: none)


Gene families : OG0001497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g005170.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00270600 evm_27.TU.AmTr_v1... 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.07 OrthoFinder output from all 47 species
AMTR_s00017p00234440 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT2G16940 No alias Splicing factor, CC1-like 0.02 OrthoFinder output from all 47 species
AT5G09880 No alias Splicing factor, CC1-like 0.06 OrthoFinder output from all 47 species
Adi_g075755 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21138 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28379 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g32208 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g41657 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g62066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36170 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.27G027600.1 Ceric.27G027600 not classified & original description: pacid=50605291... 0.05 OrthoFinder output from all 47 species
Ceric.33G026000.1 Ceric.33G026000 not classified & original description: pacid=50607594... 0.08 OrthoFinder output from all 47 species
Dac_g05708 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g08281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20118 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47761 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_39308 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os03g05830.1 LOC_Os03g05830 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g18833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430689g0020 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp7g19710.1 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Ore_g15339 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g41477 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25040 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009589 No alias not classified & original description: CDS=346-2226 0.02 OrthoFinder output from all 47 species
Sam_g39366 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g10142 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004710_P005 Zm00001e004710 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e012773_P005 Zm00001e012773 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e038994_P002 Zm00001e038994 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR029123 RBM39_linker 402 499
IPR000504 RRM_dom 215 277
IPR000504 RRM_dom 312 382
IPR000504 RRM_dom 505 558
No external refs found!