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  5. Solyc10g084610.3.1

Solyc10g084610.3.1 (RPL23AB, Solyc10g084610)


Aliases : RPL23AB, Solyc10g084610

Description : component RPL23a of LSU proteome component


Gene families : OG0001401 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001401_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g084610.3.1
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00069970 RPL23AB,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00132520 RPL23AB,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
AT2G39460 RPL23A, RPL23AA, ATRPL23A ribosomal protein L23AA 0.05 OrthoFinder output from all 47 species
AT3G55280 RPL23AB ribosomal protein L23AB 0.07 OrthoFinder output from all 47 species
Adi_g005345 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g31538 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g18428 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene13493.t1 RPL23A, RPL23AA,... component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000037.39 RPL23AB Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre06.g282500 RPL23A, RPL23AA, ATRPL23A Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Gb_38537 RPL23AB component RPL23a of LSU proteome component 0.05 OrthoFinder output from all 47 species
LOC_Os04g42270.2 RPL23AB, LOC_Os04g42270 component RPL23a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Lfl_g18579 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_10430928g0010 RPL23AB component RPL23a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Mp2g00570.1 RPL23AB component RPL23a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Pp3c3_21160V3.1 RPL23AB, Pp3c3_21160 ribosomal protein L23AB 0.02 OrthoFinder output from all 47 species
Sam_g06116 No alias component *(uL23) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g06117 No alias component *(uL23) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo271663 RPL23AB Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Spa_g01808 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g25289 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Tin_g03678 RPL23AB component *(uL23) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e007662_P001 RPL23AB, Zm00001e007662 component RPL23a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e031062_P001 RPL23A, RPL23AA,... component RPL23a of LSU proteome component 0.05 OrthoFinder output from all 47 species
Zm00001e041164_P001 RPL23A, RPL23AA,... component RPL23a of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005633 Ribosomal_L23/L25_N 15 64
IPR013025 Ribosomal_L25/23 74 136
No external refs found!