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  5. Solyc10g084220.3.1

Solyc10g084220.3.1 (FRS7, Solyc10g084220)


Aliases : FRS7, Solyc10g084220

Description : transcription factor (FAR1)


Gene families : OG0002906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002906_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g084220.3.1

Target Alias Description ECC score Gene Family Method Actions
AT3G22170 FHY3 far-red elongated hypocotyls 3 0.03 OrthoFinder output from all 47 species
GSVIVT01017369001 FRS8 RNA biosynthesis.transcriptional activation.FAR1... 0.04 OrthoFinder output from all 47 species
GSVIVT01035877001 FRS6 RNA biosynthesis.transcriptional activation.FAR1... 0.03 OrthoFinder output from all 47 species
GSVIVT01037455001 FRS3 RNA biosynthesis.transcriptional activation.FAR1... 0.05 OrthoFinder output from all 47 species
LOC_Os02g39520.2 FRS6, LOC_Os02g39520 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species
LOC_Os03g15010.1 FRS6, LOC_Os03g15010 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species
LOC_Os03g50900.1 FRS5, LOC_Os03g50900 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species
LOC_Os03g56630.1 FRS5, LOC_Os03g56630 transcription factor (FAR1) 0.02 OrthoFinder output from all 47 species
LOC_Os04g40060.1 FRS6, LOC_Os04g40060 transcription factor (FAR1) 0.03 OrthoFinder output from all 47 species
LOC_Os04g52560.1 FRS5, LOC_Os04g52560 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 671 698
IPR004330 FAR1_DNA_bnd_dom 59 133
IPR004330 FAR1_DNA_bnd_dom 214 288
IPR018289 MULE_transposase_dom 388 479
No external refs found!