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  5. Solyc10g080630.2.1

Solyc10g080630.2.1 (Solyc10g080630)


Aliases : Solyc10g080630

Description : Spliceosome-associated protein 130 A OS=Arabidopsis thaliana (sp|p0dkl4|s130a_arath : 116.0)


Gene families : OG0005770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005770_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g080630.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00260810 evm_27.TU.AmTr_v1... DNA damage-binding protein 1 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
AT3G11960 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.06 OrthoFinder output from all 47 species
Adi_g008160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13991 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g11406 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11695.t1 Aspi01Gene11695 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01033428001 No alias Spliceosome-associated protein 130 A OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Gb_25386 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Lfl_g02452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432916g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_129261g0030 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_20031g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_8503923g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g14183 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g62455 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo448595 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Zm00001e033071_P001 Zm00001e033071 DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 957 1345
No external refs found!