1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g055370.2.1

Solyc10g055370.2.1 (Solyc10g055370)


Aliases : Solyc10g055370

Description : no description available(sp|a0a1p8b8f8|xyn5_arath : 301.0)


Gene families : OG0001478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g055370.2.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT4G33820 No alias Glycosyl hydrolase superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g036837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10327 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17062 ATXYN1, RXF12 endo-beta-1,4-xylanase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11065 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037825001 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01037832001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01037833001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_02219 No alias no description available(sp|q84wt5|xyn5l_arath : 355.0) 0.03 OrthoFinder output from all 47 species
LOC_Os01g04290.1 LOC_Os01g04290 endo-beta-1,4-xylanase 0.04 OrthoFinder output from all 47 species
LOC_Os01g04300.1 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.04 OrthoFinder output from all 47 species
LOC_Os03g10478.1 LOC_Os03g10478 no description available(sp|q84wt5|xyn5l_arath : 394.0) 0.02 OrthoFinder output from all 47 species
LOC_Os05g23924.1 LOC_Os05g23924 no description available(sp|q84wt5|xyn5l_arath : 299.0) 0.03 OrthoFinder output from all 47 species
LOC_Os05g25560.1 LOC_Os05g25560 endo-beta-1,4-xylanase 0.03 OrthoFinder output from all 47 species
LOC_Os07g27320.1 LOC_Os07g27320 endo-beta-1,4-xylanase 0.01 OrthoFinder output from all 47 species
Msp_g31883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g106990.2.1 Solyc01g106990 no description available(sp|q84wt5|xyn5l_arath : 338.0) 0.03 OrthoFinder output from all 47 species
Solyc05g051260.3.1 Solyc05g051260 no description available(sp|q84wt5|xyn5l_arath : 344.0) 0.04 OrthoFinder output from all 47 species
Zm00001e001013_P003 Zm00001e001013 no description available(sp|q84wt5|xyn5l_arath : 305.0) 0.03 OrthoFinder output from all 47 species
Zm00001e016992_P001 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.03 OrthoFinder output from all 47 species
Zm00001e038773_P006 Zm00001e038773 no description available(sp|q84wt5|xyn5l_arath : 388.0) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR001000 GH10_dom 217 473
No external refs found!