1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g017530.3.1

Solyc10g017530.3.1 (RH8, ATRH8, Solyc10g017530)


Aliases : RH8, ATRH8, Solyc10g017530

Description : DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana (sp|q8rxk6|rh8_arath : 803.0)


Gene families : OG0001822 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g017530.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00258110 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Ala_g02069 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19787 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0005.g009123 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original... 0.03 OrthoFinder output from all 47 species
Cba_g72326 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G064200.1 RH8, ATRH8,... DDX6-type mRNA helicase *(RH12/RH8) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g12091 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g45040.3 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Len_g13816 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02022 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g14570.1 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Pir_g00579 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g18112 No alias DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004416_P001 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e012585_P001 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e015237_P002 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 142 306
IPR001650 Helicase_C 342 449
No external refs found!