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  5. Solyc10g005900.3.1

Solyc10g005900.3.1 (Solyc10g005900)


Aliases : Solyc10g005900

Description : subunit TFB1 of multifunctional TFIIh complex. component TFB1 of TFIIh basal transcription factor complex. transcription factor (BSD)


Gene families : OG0004762 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004762_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g005900.3.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g09652 No alias component *(TFB1) of TFIIh basal transcription factor... 0.05 OrthoFinder output from all 47 species
Ala_g14658 No alias component *(TFB1) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021493.68 No alias RNA biosynthesis.transcriptional activation.BSD... 0.01 OrthoFinder output from all 47 species
Cre10.g466550 No alias RNA biosynthesis.transcriptional activation.BSD... 0.01 OrthoFinder output from all 47 species
GSVIVT01014785001 No alias RNA biosynthesis.transcriptional activation.BSD... 0.03 OrthoFinder output from all 47 species
LOC_Os08g25060.1 LOC_Os08g25060 subunit TFB1 of multifunctional TFIIh complex. component... 0.05 OrthoFinder output from all 47 species
Tin_g01127 No alias component *(TFB1) of TFIIh basal transcription factor... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR005607 BSD_dom 208 255
No external refs found!