1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g005125.1.1

Solyc10g005125.1.1 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1, Solyc10g005125

Description : Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana (sp|q9sp32|dcl1_arath : 1282.0)


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g005125.1.1

Target Alias Description ECC score Gene Family Method Actions
Aob_g12492 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.05 OrthoFinder output from all 47 species
GSVIVT01027460001 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica 0.05 OrthoFinder output from all 47 species
LOC_Os03g38740.1 ATDCL2, DCL2,... Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
MA_10429678g0010 ATDCL2, DCL2 Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_311065g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_525318g0010 ATDCL2, DCL2 Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Zm00001e000158_P001 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 656 773
IPR005034 Dicer_dimerisation_dom 848 936
IPR006935 Helicase/UvrB_N 260 420
No external refs found!