Aliases : Solyc09g097820
Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 OS=Arabidopsis thaliana (sp|f4jrj6|deah9_arath : 1025.0)
Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00021p00166450 | evm_27.TU.AmTr_v1... | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.06 | OrthoFinder output from all 47 species | |
AMTR_s00090p00083520 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.spliceosome... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00110p00073830 | ESP3, EMB2733,... | RNA processing.RNA splicing.spliceosome... | 0.03 | OrthoFinder output from all 47 species | |
AT1G26370 | No alias | RNA helicase family protein | 0.05 | OrthoFinder output from all 47 species | |
AT2G35340 | MEE29 | helicase domain-containing protein | 0.03 | OrthoFinder output from all 47 species | |
AT3G62310 | No alias | RNA helicase family protein | 0.03 | OrthoFinder output from all 47 species | |
Als_g01897 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g11041 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g64809 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene21867.t1 | Aspi01Gene21867 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene28720.t1 | Aspi01Gene28720 | RNA helicase *(Prp22) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Cba_g04257 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g11619 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.21G075900.1 | EMB3011, Ceric.21G075900 | RNA helicase *(Prp16) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.25G032700.1 | Ceric.25G032700 | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.06 | OrthoFinder output from all 47 species | |
Ceric.34G065000.1 | Ceric.34G065000 | not classified & original description: pacid=50623415... | 0.05 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000796.23 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000842.2 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000984.27 | ESP3, EMB2733 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00021589.28 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.01 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00022075.25 | No alias | RNA processing.RNA splicing.spliceosome... | 0.02 | OrthoFinder output from all 47 species | |
Cre07.g349100 | ESP3, EMB2733 | RNA processing.RNA splicing.spliceosome... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g20664 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g42294 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g07449 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g14594 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01010362001 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os01g11370.1 | LOC_Os01g11370 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os06g09280.1 | LOC_Os06g09280 | RNA helicase (Prp22) | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os11g20554.1 | LOC_Os11g20554 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
Len_g31554 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g03223 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
MA_10428112g0030 | FAS4, ATFAS4 | ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
MA_10430150g0010 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
MA_4084g0010 | HVT1, ATVT-1 | DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Mp4g02780.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
Mp4g16380.1 | ESP3, EMB2733 | RNA helicase (Prp2) | 0.02 | OrthoFinder output from all 47 species | |
Mp7g03460.1 | EMB3011 | RNA helicase (Prp16) | 0.03 | OrthoFinder output from all 47 species | |
Msp_g13247 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g30533 | No alias | RNA helicase *(Prp22) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g14727 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0039.g012085 | No alias | not classified & original description: CDS=161-2176 | 0.03 | OrthoFinder output from all 47 species | |
Sam_g06275 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g16290 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Spa_g17882 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g28400 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Tin_g31207 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e001487_P003 | Zm00001e001487 | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e016478_P002 | Zm00001e016478 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e028404_P001 | Zm00001e028404 | RNA helicase (Prp22) | 0.05 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004386 | helicase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0004519 | endonuclease activity | IEP | HCCA |
MF | GO:0004521 | endoribonuclease activity | IEP | HCCA |
MF | GO:0004523 | RNA-DNA hybrid ribonuclease activity | IEP | HCCA |
MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
MF | GO:0004609 | phosphatidylserine decarboxylase activity | IEP | HCCA |
MF | GO:0004659 | prenyltransferase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | HCCA |
MF | GO:0008318 | protein prenyltransferase activity | IEP | HCCA |
BP | GO:0008654 | phospholipid biosynthetic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
MF | GO:0016831 | carboxy-lyase activity | IEP | HCCA |
MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | HCCA |
MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | HCCA |
BP | GO:0018342 | protein prenylation | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
BP | GO:0097354 | prenylation | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No external refs found! |