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  5. Solyc09g091900.4.1

Solyc09g091900.4.1 (ERD2B, Solyc09g091900)


Aliases : ERD2B, Solyc09g091900

Description : ERD2 COPI trafficking K/HDEL-signature receptor


Gene families : OG0002105 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002105_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g091900.4.1

Target Alias Description ECC score Gene Family Method Actions
AT3G25040 ERD2B endoplasmic reticulum retention defective 2B 0.07 OrthoFinder output from all 47 species
Aspi01Gene17521.t1 ERD2B, Aspi01Gene17521 COPI trafficking K/HDEL-signature cargo receptor &... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009828 No alias not classified & original description: CDS=1-231 0.04 OrthoFinder output from all 47 species
Ceric.08G005400.1 ERD2B, Ceric.08G005400 COPI trafficking K/HDEL-signature cargo receptor &... 0.06 OrthoFinder output from all 47 species
Ceric.25G011300.1 ERD2B, Ceric.25G011300 COPI trafficking K/HDEL-signature cargo receptor &... 0.03 OrthoFinder output from all 47 species
Dcu_g00909 ERD2B COPI trafficking K/HDEL-signature cargo receptor &... 0.04 OrthoFinder output from all 47 species
Ehy_g08916 ERD2B COPI trafficking K/HDEL-signature cargo receptor &... 0.04 OrthoFinder output from all 47 species
LOC_Os04g30800.2 ERD2B, LOC_Os04g30800 ERD2 COPI trafficking K/HDEL-signature receptor 0.04 OrthoFinder output from all 47 species
MA_20587g0010 ERD2B ERD2 COPI trafficking K/HDEL-signature receptor 0.05 OrthoFinder output from all 47 species
Msp_g02326 ERD2B COPI trafficking K/HDEL-signature cargo receptor &... 0.04 OrthoFinder output from all 47 species
Nbi_g02747 ERD2B COPI trafficking K/HDEL-signature cargo receptor &... 0.04 OrthoFinder output from all 47 species
Ppi_g05082 ERD2B COPI trafficking K/HDEL-signature cargo receptor &... 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003111 ERD2B COPI trafficking K/HDEL-signature cargo receptor &... 0.02 OrthoFinder output from all 47 species
Smo75833 ERD2B Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder output from all 47 species
Tin_g05413 ERD2B COPI trafficking K/HDEL-signature cargo receptor &... 0.03 OrthoFinder output from all 47 species
Zm00001e008905_P001 ERD2B, Zm00001e008905 ERD2 COPI trafficking K/HDEL-signature receptor 0.03 OrthoFinder output from all 47 species
Zm00001e027462_P003 ERD2, ATERD2,... ERD2 COPI trafficking K/HDEL-signature receptor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006621 protein retention in ER lumen IEA Interproscan
MF GO:0046923 ER retention sequence binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000133 ER_ret_rcpt 28 171
No external refs found!