Solyc09g083380.4.1 (Solyc09g083380)

Aliases : Solyc09g083380

Description : linker histone (H1)

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g083380.4.1
Cluster	HCCA: Cluster_129

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264270	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H1 linker histone	0.05	OrthoFinder output from all 47 species
AMTR_s00057p00112340	HIS1-3,...	Chromatin organisation.histones.H1 linker histone	0.04	OrthoFinder output from all 47 species
AT1G06760	No alias	winged-helix DNA-binding transcription factor family protein	0.12	OrthoFinder output from all 47 species
AT2G30620	No alias	winged-helix DNA-binding transcription factor family protein	0.04	OrthoFinder output from all 47 species
Adi_g029498	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g052669	No alias	linker histone *(H1) & original description: none	0.06	OrthoFinder output from all 47 species
Adi_g088302	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g104846	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g31757	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g23326	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g05135	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g14110	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g36461	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene25496.t1	HIS1-3, Aspi01Gene25496	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0049.g030788	No alias	linker histone *(H1) & original description: CDS=1-786	0.05	OrthoFinder output from all 47 species
Cba_g50410	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.05G101000.1	HIS1-3, Ceric.05G101000	linker histone *(H1) & original description:...	0.08	OrthoFinder output from all 47 species
Ceric.17G067800.1	HIS1-3, Ceric.17G067800	linker histone *(H1) & original description:...	0.08	OrthoFinder output from all 47 species
Ceric.34G011100.1	HIS1-3, Ceric.34G011100	linker histone *(H1) & original description:...	0.07	OrthoFinder output from all 47 species
Ceric.34G044200.1	Ceric.34G044200	linker histone *(H1) & original description:...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020780.71	HIS1-3	No description available	0.02	OrthoFinder output from all 47 species
Cre13.g567450	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.21	OrthoFinder output from all 47 species
Dac_g20797	HIS1-3	linker histone *(H1) & original description: none	0.08	OrthoFinder output from all 47 species
Dcu_g00585	HIS1-3	linker histone *(H1) & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g02276	No alias	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g23302	No alias	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g05343	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g05478	No alias	linker histone *(H1) & original description: none	0.07	OrthoFinder output from all 47 species
Ehy_g10146	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01028074001	No alias	Chromatin organisation.histones.H1 linker histone	0.03	OrthoFinder output from all 47 species
Gb_02738	No alias	linker histone (H1)	0.19	OrthoFinder output from all 47 species
Gb_03348	HIS1-3	linker histone (H1)	0.11	OrthoFinder output from all 47 species
LOC_Os04g18090.1	HIS1-3, LOC_Os04g18090	linker histone (H1)	0.17	OrthoFinder output from all 47 species
LOC_Os07g08710.1	LOC_Os07g08710	linker histone (H1)	0.1	OrthoFinder output from all 47 species
Len_g14042	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g54319	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
MA_102457g0010	No alias	linker histone (H1)	0.1	OrthoFinder output from all 47 species
MA_10428525g0020	No alias	linker histone (H1)	0.03	OrthoFinder output from all 47 species
MA_10436125g0010	HIS1-3	linker histone (H1)	0.04	OrthoFinder output from all 47 species
MA_10436125g0020	ATTRB1, TRB1	linker histone (H1)	0.05	OrthoFinder output from all 47 species
MA_500183g0010	HIS1-3	linker histone (H1)	0.13	OrthoFinder output from all 47 species
MA_877599g0010	No alias	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Mp6g03150.1	HIS1-3	linker histone (H1)	0.06	OrthoFinder output from all 47 species
Msp_g09818	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g04093	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g11329	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c18_14270V3.1	Pp3c18_14270	winged-helix DNA-binding transcription factor family protein	0.02	OrthoFinder output from all 47 species
Sam_g11041	No alias	linker histone *(H1) & original description: none	0.06	OrthoFinder output from all 47 species
Sam_g11042	No alias	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g09322	HIS1-3	linker histone *(H1) & original description: none	0.07	OrthoFinder output from all 47 species
Spa_g09324	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g18792	HIS1-3	linker histone *(H1) & original description: none	0.07	OrthoFinder output from all 47 species
Spa_g50934	HIS1-3	linker histone *(H1) & original description: none	0.09	OrthoFinder output from all 47 species
Spa_g50935	HIS1-3	linker histone *(H1) & original description: none	0.12	OrthoFinder output from all 47 species
Tin_g01715	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e006018_P006	Zm00001e006018	linker histone (H1)	0.08	OrthoFinder output from all 47 species
Zm00001e007189_P001	HIS1-3, Zm00001e007189	linker histone (H1)	0.12	OrthoFinder output from all 47 species
Zm00001e011857_P001	Zm00001e011857	linker histone (H1)	0.1	OrthoFinder output from all 47 species
Zm00001e011859_P001	Zm00001e011859	linker histone (H1)	0.12	OrthoFinder output from all 47 species
Zm00001e032965_P005	Zm00001e032965	linker histone (H1)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
CC	GO:0031390	Ctf18 RFC-like complex	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	20	85

External Links

No external refs found!

Solyc09g083380.4.1 (Solyc09g083380)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation