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  5. Solyc09g076030.4.1

Solyc09g076030.4.1 (Psb27-H1, LPA19,...)


Aliases : Psb27-H1, LPA19, Solyc09g076030

Description : Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana (sp|q9zvz9|pb27b_arath : 183.0)


Gene families : OG0004638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004638_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g076030.4.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00176870 Psb27-H1, LPA19,... Photosystem II D1 precursor processing protein PSB27-H2,... 0.02 OrthoFinder output from all 47 species
AT1G05385 Psb27-H1, LPA19 photosystem II 11 kDa protein-related 0.03 OrthoFinder output from all 47 species
Adi_g021002 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g22474 Psb27-H1, LPA19 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g15958 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25834.t1 Psb27-H1, LPA19,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g34104 Psb27-H1, LPA19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37645 Psb27-H1, LPA19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47626 Psb27-H1, LPA19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017974001 Psb27-H1, LPA19 Photosystem II D1 precursor processing protein PSB27-H2,... 0.1 OrthoFinder output from all 47 species
Gb_15835 Psb27-H1, LPA19 Photosystem II D1 precursor processing protein PSB27-H2,... 0.01 OrthoFinder output from all 47 species
LOC_Os03g53640.1 Psb27-H1, LPA19,... Photosystem II D1 precursor processing protein PSB27-H2,... 0.07 OrthoFinder output from all 47 species
Msp_g30101 Psb27-H1, LPA19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04094 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30336 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0218.g026101 Psb27-H1, LPA19 not classified & original description: CDS=109-834 0.04 OrthoFinder output from all 47 species
Sam_g19759 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g30155 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51028 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0010207 photosystem II assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR025585 PSII_Pbs27 45 207
No external refs found!