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  5. Solyc09g075760.4.1

Solyc09g075760.4.1 (CYCT1;4, Solyc09g075760)


Aliases : CYCT1;4, Solyc09g075760

Description : cyclin (CYCT)


Gene families : OG0000467 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g075760.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00236330 CYCT1;4,... Cyclin-T1-3 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
AMTR_s00025p00243960 CYCT1;4,... Cell cycle.regulation.cyclins.CYCT-type cyclin 0.02 OrthoFinder output from all 47 species
Als_g15535 CYCT1;4 regulatory protein *(CYCT) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Aop_g02220 CYCT1;4 regulatory protein *(CYCT) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Aop_g08325 CYCT1;4 regulatory component *(CYCT) of CTDK-I polymerase-II... 0.03 OrthoFinder output from all 47 species
Azfi_s0157.g053765 CYCT1;4 not classified & original description: CDS=75-1142 0.03 OrthoFinder output from all 47 species
Cba_g29663 CYCT1;4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G041600.1 CYCT1;4, Ceric.02G041600 regulatory protein *(CYCT) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.112 CYCT1;4 Cell cycle.regulation.cyclins.CYCT-type cyclin 0.02 OrthoFinder output from all 47 species
GSVIVT01013628001 CYCT1;4 Cell cycle.regulation.cyclins.CYCT-type cyclin 0.06 OrthoFinder output from all 47 species
GSVIVT01017929001 CYCT1;4 Cell cycle.regulation.cyclins.CYCT-type cyclin 0.05 OrthoFinder output from all 47 species
Len_g09786 CYCT1;4 regulatory component *(CYCT) of CTDK-I polymerase-II... 0.02 OrthoFinder output from all 47 species
Nbi_g14878 CYCT1;4 regulatory protein *(CYCT) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ppi_g02214 CYCT1;4 regulatory component *(CYCT) of CTDK-I polymerase-II... 0.02 OrthoFinder output from all 47 species
Sam_g36100 No alias regulatory protein *(CYCT) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Smo437421 CYCT1;4 Cell cycle.regulation.cyclins.CYCT-type cyclin 0.02 OrthoFinder output from all 47 species
Spa_g18000 CYCT1;4 regulatory component *(CYCT) of CTDK-I polymerase-II... 0.03 OrthoFinder output from all 47 species
Tin_g09504 CYCT1;4 regulatory protein *(CYCT) of cell cycle & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR006671 Cyclin_N 169 305
No external refs found!