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  5. Solyc09g075030.3.1

Solyc09g075030.3.1 (Solyc09g075030)


Aliases : Solyc09g075030

Description : pre-60S ribosomal subunit assembly factor (NOP16)


Gene families : OG0005949 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005949_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g075030.3.1

Target Alias Description ECC score Gene Family Method Actions
AT1G02870 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.04 OrthoFinder output from all 47 species
Adi_g012865 No alias pre-60S ribosomal subunit assembly factor *(NOP16) &... 0.03 OrthoFinder output from all 47 species
Aob_g00767 No alias pre-60S ribosomal subunit assembly factor *(NOP16) &... 0.02 OrthoFinder output from all 47 species
Cre17.g726650 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g07324 No alias pre-60S ribosomal subunit assembly factor *(NOP16) &... 0.03 OrthoFinder output from all 47 species
Ehy_g00744 No alias pre-60S ribosomal subunit assembly factor *(NOP16) &... 0.02 OrthoFinder output from all 47 species
Mp1g07200.1 No alias pre-60S ribosomal subunit assembly factor (NOP16) 0.02 OrthoFinder output from all 47 species
Tin_g23387 No alias pre-60S ribosomal subunit assembly factor *(NOP16) &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019002 Ribosome_biogenesis_Nop16 5 76
IPR019002 Ribosome_biogenesis_Nop16 82 183
No external refs found!