Aliases : PMS1, Solyc09g074990
Description : component PMS1 of MLH1-PMS1 heterodimer
Gene families : OG0005197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005197_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc09g074990.4.1 | |
Cluster | HCCA: Cluster_21 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G02460 | PMS1 | DNA mismatch repair protein, putative | 0.08 | OrthoFinder output from all 47 species | |
Aob_g21572 | PMS1 | component *(PMS1) of MLH1-PMS1 heterodimer & original... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000057.93 | PMS1 | DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Cre04.g227000 | PMS1 | DNA damage response.DNA repair mechanisms.mismatch... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01027985001 | PMS1 | DNA damage response.DNA repair mechanisms.mismatch... | 0.09 | OrthoFinder output from all 47 species | |
LOC_Os02g37920.1 | PMS1, LOC_Os02g37920 | component PMS1 of MLH1-PMS1 heterodimer | 0.05 | OrthoFinder output from all 47 species | |
Len_g24503 | PMS1 | component *(PMS1) of MLH1-PMS1 heterodimer & original... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g06211 | PMS1 | component *(PMS1) of MLH1-PMS1 heterodimer & original... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e022851_P002 | PMS1, Zm00001e022851 | component PMS1 of MLH1-PMS1 heterodimer | 0.05 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006298 | mismatch repair | IEA | Interproscan |
MF | GO:0030983 | mismatched DNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000724 | double-strand break repair via homologous recombination | IEP | HCCA |
BP | GO:0000725 | recombinational repair | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004519 | endonuclease activity | IEP | HCCA |
MF | GO:0004521 | endoribonuclease activity | IEP | HCCA |
MF | GO:0004525 | ribonuclease III activity | IEP | HCCA |
MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
BP | GO:0006302 | double-strand break repair | IEP | HCCA |
BP | GO:0006310 | DNA recombination | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | HCCA |
MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | HCCA |
MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
No external refs found! |