Solyc09g074990.4.1 (PMS1, Solyc09g074990)

Aliases : PMS1, Solyc09g074990

Description : component PMS1 of MLH1-PMS1 heterodimer

Gene families : OG0005197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005197_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g074990.4.1
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AT4G02460	PMS1	DNA mismatch repair protein, putative	0.08	OrthoFinder output from all 47 species
Aob_g21572	PMS1	component *(PMS1) of MLH1-PMS1 heterodimer & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000057.93	PMS1	DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre04.g227000	PMS1	DNA damage response.DNA repair mechanisms.mismatch...	0.04	OrthoFinder output from all 47 species
GSVIVT01027985001	PMS1	DNA damage response.DNA repair mechanisms.mismatch...	0.09	OrthoFinder output from all 47 species
LOC_Os02g37920.1	PMS1, LOC_Os02g37920	component PMS1 of MLH1-PMS1 heterodimer	0.05	OrthoFinder output from all 47 species
Len_g24503	PMS1	component *(PMS1) of MLH1-PMS1 heterodimer & original...	0.04	OrthoFinder output from all 47 species
Lfl_g06211	PMS1	component *(PMS1) of MLH1-PMS1 heterodimer & original...	0.03	OrthoFinder output from all 47 species
Zm00001e022851_P002	PMS1, Zm00001e022851	component PMS1 of MLH1-PMS1 heterodimer	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004525	ribonuclease III activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014790	MutL_C	504	662
IPR013507	DNA_mismatch_S5_2-like	7	114

External Links

No external refs found!

Solyc09g074990.4.1 (PMS1, Solyc09g074990)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation