- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : Solyc09g061890
Description : pectate lyase
Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00039p00189000 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00078p00106380 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.02 | OrthoFinder output from all 47 species | |
| AT1G04680 | No alias | Pectin lyase-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT1G30350 | No alias | Pectin lyase-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G07010 | No alias | Pectin lyase-like superfamily protein | 0.08 | OrthoFinder output from all 47 species | |
| AT4G13210 | No alias | Pectin lyase-like superfamily protein | 0.06 | OrthoFinder output from all 47 species | |
| AT5G09280 | No alias | Pectin lyase-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G15110 | No alias | Pectate lyase family protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G48900 | No alias | Pectin lyase-like superfamily protein | 0.08 | OrthoFinder output from all 47 species | |
| AT5G55720 | No alias | Pectin lyase-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g013762 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g19777 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g38995 | RHS14 | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g16408 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g21580 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g65574 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene12080.t1 | Aspi01Gene12080 | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0054.g033628 | RHS14 | EC_4.2 carbon-oxygen lyase & original description: CDS=168-1388 | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.14G053300.1 | Ceric.14G053300 | EC_4.2 carbon-oxygen lyase & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.30G051100.1 | RHS14, Ceric.30G051100 | EC_4.2 carbon-oxygen lyase & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.30G051200.1 | RHS14, Ceric.30G051200 | EC_4.2 carbon-oxygen lyase & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g12057 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g43847 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g40377 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01000592001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01003984001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008053001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01011348001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01020067001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01020068001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01024239001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01029048001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.05 | OrthoFinder output from all 47 species | |
| Gb_02248 | No alias | pectate lyase | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os02g12300.1 | AT59, LOC_Os02g12300 | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g05050.1 | LOC_Os04g05050 | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g05209.1 | LOC_Os06g05209 | pectate lyase | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os06g05260.1 | LOC_Os06g05260 | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g38510.2 | LOC_Os06g38510 | pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| MA_101171g0010 | No alias | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| MA_103716g0010 | No alias | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| MA_10426822g0020 | No alias | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| MA_62112g0010 | No alias | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| MA_66914g0010 | No alias | pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| MA_97947g0010 | No alias | pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| Mp3g01000.1 | No alias | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| Mp8g00770.1 | No alias | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g10750 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g01001 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g43436 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g26215 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g41165 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pp3c17_16370V3.1 | Pp3c17_16370 | Pectin lyase-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g06396 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0006.g003136 | No alias | EC_4.2 carbon-oxygen lyase & original description: CDS=1-1299 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0093.g019058 | No alias | EC_4.2 carbon-oxygen lyase & original description: CDS=1-1206 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g11165 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g031960.3.1 | Solyc02g031960 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc06g071840.3.1 | Solyc06g071840 | Probable pectate lyase 22 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc09g008380.3.1 | Solyc09g008380 | pectate lyase | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g31391 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g40115 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g07683 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g09317 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e004654_P002 | Zm00001e004654 | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e008755_P002 | Zm00001e008755 | pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e024959_P001 | AT59, Zm00001e024959 | pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e037311_P001 | Zm00001e037311 | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e040624_P001 | Zm00001e040624 | pectate lyase | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006950 | response to stress | IEP | HCCA |
| BP | GO:0006952 | defense response | IEP | HCCA |
| MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015297 | antiporter activity | IEP | HCCA |
| MF | GO:0022804 | active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0042910 | xenobiotic transmembrane transporter activity | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 174 | 355 |
| No external refs found! |