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  5. Solyc09g059770.1.1

Solyc09g059770.1.1 (Solyc09g059770)


Aliases : Solyc09g059770

Description : E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana (sp|q9su29|upl5_arath : 99.8)


Gene families : OG0002826 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002826_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g059770.1.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cba_g01332 UPL5 E3 ubiquitin ligase *(UPL5) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009620 response to fungus IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0050832 defense response to fungus IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
InterPro domains Description Start Stop
IPR000569 HECT_dom 2 105
No external refs found!