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  5. Solyc09g050068.1.1

Solyc09g050068.1.1 (RPL2.1, Solyc09g050068)


Aliases : RPL2.1, Solyc09g050068

Description : 50S ribosomal protein L2, chloroplastic OS=Solanum lycopersicum (sp|q2mi59|rk2_sollc : 127.0)


Gene families : OG0002194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002194_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g050068.1.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g14432 RPL2.1 component *(uL2c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aev_g24286 No alias component *(uL2m) of large mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aob_g13898 RPL2.1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.07G017400.1 RPL2.1, Ceric.07G017400 not classified & original description: pacid=50626616... 0.04 OrthoFinder output from all 47 species
Ceric.38G009500.1 RPL2.1, Ceric.38G009500 not classified & original description: pacid=50580350... 0.05 OrthoFinder output from all 47 species
Msp_g32319 RPL2 component *(uL2m) of large mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Msp_g48940 RPL2.1 component *(uL2c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Nbi_g04996 RPL2.1 component *(uL2c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ore_g43250 RPL2.1 component *(uL2c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Solyc00g500150.1.1 RPL2.1, Solyc00g500150 50S ribosomal protein L2, chloroplastic OS=Nicotiana... 0.09 OrthoFinder output from all 47 species
Solyc10g012217.1.1 RPL2.1, Solyc10g012217 50S ribosomal protein L2, chloroplastic OS=Nicotiana... 0.21 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!