Solyc09g018230.1.1 (Solyc09g018230)

Aliases : Solyc09g018230

Description : U-box domain-containing protein 16 OS=Arabidopsis thaliana (sp|q9lzw3|pub16_arath : 659.0)

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g018230.1.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00153p00035720	ATPUB17, PUB17,...	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	OrthoFinder output from all 47 species
AT3G07360	PUB9, ATPUB9	plant U-box 9	0.03	OrthoFinder output from all 47 species
Adi_g057744	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g06113	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g03476	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g17547	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g28208	ATPUB17, PUB17	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene72934.t1	PUB13, ATPUB13,...	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000295	No alias	not classified & original description: CDS=1-2304	0.02	OrthoFinder output from all 47 species
Cba_g14644	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.1Z057600.1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g23494	PUB18, ATPUB18	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g16944	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g29208	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007275001	PUB9, ATPUB9	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
GSVIVT01009347001	No alias	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01016225001	PUB14, ATPUB14	U-box domain-containing protein 14 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01036669001	No alias	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Gb_10627	PUB8, B80	U-box domain-containing protein 13 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_20805	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Gb_29276	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
LOC_Os01g60860.1	LOC_Os01g60860	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os02g13960.1	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.06	OrthoFinder output from all 47 species
MA_10329986g0010	No alias	U-box domain-containing protein 13 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
MA_10431607g0010	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.03	OrthoFinder output from all 47 species
Pir_g35847	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g38766	No alias	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g01237	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g11362	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g14332	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g30958	PUB13, ATPUB13	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005097	No alias	not classified & original description: CDS=1-2154	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017664	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=217-2226	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020568	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=347-2224	0.02	OrthoFinder output from all 47 species
Sam_g39035	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Smo415326	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.04	OrthoFinder output from all 47 species
Smo75609	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	OrthoFinder output from all 47 species
Solyc02g072080.1.1	ATPUB17, PUB17,...	U-box domain-containing protein 17 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc04g082440.4.1	PUB15, Solyc04g082440	U-box domain-containing protein 15 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e014377_P001	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
Zm00001e014566_P002	PUB9, ATPUB9,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Zm00001e019429_P001	Zm00001e019429	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e035415_P001	Zm00001e035415	U-box domain-containing protein 4 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e036734_P001	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	413	451
IPR003613	Ubox_domain	282	353

External Links

No external refs found!

Solyc09g018230.1.1 (Solyc09g018230)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation