Solyc09g016930.1.1 (PSBC, Solyc09g016930)

Aliases : PSBC, Solyc09g016930

Description : Photosystem II CP43 reaction center protein OS=Coffea arabica (sp|a0a331|psbc_cofar : 112.0)

Gene families : OG0003214 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003214_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g016930.1.1

Target	Alias	Description	ECC score	Gene Family Method
Cba_g32229	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.04	OrthoFinder output from all 47 species
Ceric.1Z161200.1	PSBC, Ceric.1Z161200	component *(PsbC/CP43) of PS-II reaction center complex...	0.03	OrthoFinder output from all 47 species
Dac_g04293	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.06	OrthoFinder output from all 47 species
Dcu_g10666	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.03	OrthoFinder output from all 47 species
Dde_g30384	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.04	OrthoFinder output from all 47 species
Gb_19166	PSBC	Photosystem II CP43 reaction center protein...	0.06	OrthoFinder output from all 47 species
Len_g16437	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.05	OrthoFinder output from all 47 species
Msp_g00655	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.03	OrthoFinder output from all 47 species
Ppi_g02376	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.03	OrthoFinder output from all 47 species
Sam_g14692	No alias	component *(PsbC/CP43) of PS-II reaction center complex...	0.03	OrthoFinder output from all 47 species
Smo137689	PSBC	Photosynthesis.photophosphorylation.photosystem II.PS-II...	0.03	OrthoFinder output from all 47 species
Solyc01g056470.1.1	PSBC, Solyc01g056470	Photosystem II CP43 reaction center protein OS=Amborella...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	IEA	Interproscan
BP	GO:0009767	photosynthetic electron transport chain	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016168	chlorophyll binding	IEA	Interproscan
BP	GO:0019684	photosynthesis, light reaction	IEA	Interproscan
BP	GO:0022900	electron transport chain	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000932	PS_antenna-like	40	67

External Links

No external refs found!