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  5. Solyc09g009800.3.1

Solyc09g009800.3.1 (Solyc09g009800)


Aliases : Solyc09g009800

Description : promotor-binding component TFC3 of TFIIIc transcription factor complex


Gene families : OG0002733 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002733_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g009800.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00113670 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase III-dependent... 0.08 OrthoFinder output from all 47 species
AT1G17450 No alias B-block binding subunit of TFIIIC 0.04 OrthoFinder output from all 47 species
Adi_g019438 No alias promotor-binding component *(TFC3) of TFIIIc... 0.08 OrthoFinder output from all 47 species
Ala_g16052 No alias promotor-binding component *(TFC3) of TFIIIc... 0.06 OrthoFinder output from all 47 species
Als_g03905 No alias promotor-binding component *(TFC3) of TFIIIc... 0.04 OrthoFinder output from all 47 species
Aob_g34260 No alias promotor-binding component *(TFC3) of TFIIIc... 0.03 OrthoFinder output from all 47 species
Aop_g04612 No alias promotor-binding component *(TFC3) of TFIIIc... 0.02 OrthoFinder output from all 47 species
Azfi_s0089.g042584 No alias promotor-binding component *(TFC3) of TFIIIc... 0.03 OrthoFinder output from all 47 species
Ceric.14G017100.1 Ceric.14G017100 promotor-binding component *(TFC3) of TFIIIc... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001428.4 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.04 OrthoFinder output from all 47 species
Cre12.g518107 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.04 OrthoFinder output from all 47 species
GSVIVT01016771001 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.06 OrthoFinder output from all 47 species
Gb_30476 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.06 OrthoFinder output from all 47 species
Gb_37451 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.02 OrthoFinder output from all 47 species
LOC_Os02g42200.1 LOC_Os02g42200 promotor-binding component TFC3 of TFIIIc transcription... 0.06 OrthoFinder output from all 47 species
Lfl_g18937 No alias promotor-binding component *(TFC3) of TFIIIc... 0.05 OrthoFinder output from all 47 species
MA_59941g0010 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.03 OrthoFinder output from all 47 species
Mp1g26830.1 No alias promotor-binding component TFC3 of TFIIIc transcription... 0.04 OrthoFinder output from all 47 species
Ore_g35774 No alias promotor-binding component *(TFC3) of TFIIIc... 0.03 OrthoFinder output from all 47 species
Ppi_g15417 No alias promotor-binding component *(TFC3) of TFIIIc... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005252 No alias promotor-binding component *(TFC3) of TFIIIc... 0.04 OrthoFinder output from all 47 species
Sam_g24501 No alias promotor-binding component *(TFC3) of TFIIIc... 0.03 OrthoFinder output from all 47 species
Smo409587 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.06 OrthoFinder output from all 47 species
Spa_g06971 No alias promotor-binding component *(TFC3) of TFIIIc... 0.05 OrthoFinder output from all 47 species
Tin_g16351 No alias promotor-binding component *(TFC3) of TFIIIc... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004526 ribonuclease P activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007309 TFIIIC_Bblock-bd 113 186
No external refs found!