Solyc09g009200.3.1 (GRF3, AtGRF3, Solyc09g009200)

Aliases : GRF3, AtGRF3, Solyc09g009200

Description : component GRF of GRF-GIF transcriptional complex

Gene families : OG0000528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000528_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g009200.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00189460	GRF4, AtGRF4,...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.06	OrthoFinder output from all 47 species
AMTR_s00048p00216350	GRF5, AtGRF5,...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	OrthoFinder output from all 47 species
AMTR_s00069p00196720	GRF1, AtGRF1,...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	OrthoFinder output from all 47 species
AT2G36400	GRF3, AtGRF3	growth-regulating factor 3	0.03	OrthoFinder output from all 47 species
AT3G13960	GRF5, AtGRF5	growth-regulating factor 5	0.03	OrthoFinder output from all 47 species
AT3G52910	GRF4, AtGRF4	growth-regulating factor 4	0.04	OrthoFinder output from all 47 species
AT4G37740	GRF2, AtGRF2	growth-regulating factor 2	0.04	OrthoFinder output from all 47 species
Aev_g17446	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene68335.t1	GRF1, AtGRF1,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene72796.t2	GRF2, AtGRF2,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Ceric.15G046200.1	GRF1, AtGRF1,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Ceric.36G051200.1	GRF5, AtGRF5,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Dcu_g16923	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Ehy_g12992	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
GSVIVT01015095001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.06	OrthoFinder output from all 47 species
GSVIVT01016762001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.05	OrthoFinder output from all 47 species
GSVIVT01024326001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	OrthoFinder output from all 47 species
Gb_20443	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Gb_26136	GRF5, AtGRF5	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
LOC_Os02g47280.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species
LOC_Os02g53690.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
LOC_Os03g47140.1	GRF1, AtGRF1,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
LOC_Os04g48510.1	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
LOC_Os04g51190.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
MA_111469g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
MA_137877g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.07	OrthoFinder output from all 47 species
MA_18836g0010	GRF5, AtGRF5	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
MA_33661g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
MA_88101g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
Mp8g16900.1	GRF2, AtGRF2	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Ppi_g05270	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Ppi_g63627	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002301	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011382	No alias	not classified & original description: CDS=103-1059	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019225	No alias	not classified & original description: CDS=695-3535	0.02	OrthoFinder output from all 47 species
Spa_g48274	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Zm00001e015436_P001	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
Zm00001e015561_P002	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
Zm00001e016029_P002	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Zm00001e023229_P001	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Zm00001e023769_P003	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Zm00001e030774_P001	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Zm00001e036224_P001	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0018995	host cellular component	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014978	Gln-Leu-Gln_QLQ	80	113
IPR014977	WRC_dom	150	192

External Links

No external refs found!

Solyc09g009200.3.1 (GRF3, AtGRF3, Solyc09g009200)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation