1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc09g008620.3.1

Solyc09g008620.3.1 (PAB7, Solyc09g008620)


Aliases : PAB7, Solyc09g008620

Description : mRNA poly-A-tail binding factor (PABP)


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g008620.3.1

Target Alias Description ECC score Gene Family Method Actions
Dcu_g45170 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.07 OrthoFinder output from all 47 species
Dde_g51529 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01016951001 PAB6 Protein biosynthesis.translation initiation.mRNA... 0.12 OrthoFinder output from all 47 species
LOC_Os03g17030.1 PAB7, LOC_Os03g17030 mRNA poly-A-tail binding factor (PABP) 0.04 OrthoFinder output from all 47 species
Msp_g00671 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Msp_g43985 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e037390_P001 PAB5, Zm00001e037390 mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR002004 PABP_HYD 514 580
IPR000504 RRM_dom 4 74
IPR000504 RRM_dom 286 354
IPR000504 RRM_dom 92 160
IPR000504 RRM_dom 183 247
No external refs found!