Solyc09g007260.4.1 (RAP2.7, TOE1, Solyc09g007260)

Aliases : RAP2.7, TOE1, Solyc09g007260

Description : transcription factor (AP2)

Gene families : OG0000110 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g007260.4.1
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00216470	RAP2.7, TOE1,...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
AT4G36920	AP2, FLO2, FL1	Integrase-type DNA-binding superfamily protein	0.05	OrthoFinder output from all 47 species
Adi_g018198	AP2, FLO2, FL1	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Adi_g067566	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g17577	No alias	AP2-type transcription factor *(WRI/AIL) & original...	0.03	OrthoFinder output from all 47 species
Aob_g20859	PLT2	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Aob_g27594	No alias	AP2-type transcription factor *(WRI/AIL) & original...	0.04	OrthoFinder output from all 47 species
Aop_g06262	No alias	AP2-type transcription factor *(WRI/AIL) & original...	0.03	OrthoFinder output from all 47 species
Aop_g07593	No alias	AP2-type transcription factor *(WRI/AIL) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0619.g079558	AIL5, EMK, CHO1	AP2-type transcription factor *(WRI/AIL) & original...	0.06	OrthoFinder output from all 47 species
Ceric.03G054600.1	ADAP, Ceric.03G054600	AP2-type transcription factor *(WRI/AIL) & original...	0.03	OrthoFinder output from all 47 species
Ceric.1Z150100.1	AP2, FLO2, FL1,...	AP2-type transcription factor *(WRI/AIL) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g08905	AP2, FLO2, FL1	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01016352001	RAP2.7, TOE1	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
LOC_Os05g03040.1	RAP2.7, TOE1,...	transcription factor (AP2)	0.04	OrthoFinder output from all 47 species
LOC_Os08g34360.1	LOC_Os08g34360	transcription factor (AP2)	0.02	OrthoFinder output from all 47 species
LOC_Os11g03540.1	WRI1, ATWRI1,...	transcription factor (AP2)	0.06	OrthoFinder output from all 47 species
Len_g16372	AP2, FLO2, FL1	AP2-type transcription factor *(WRI/AIL) & original...	0.04	OrthoFinder output from all 47 species
Len_g45546	WRI1, ATWRI1, ASML1, WRI	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
MA_30905g0010	WRI1, ATWRI1, ASML1, WRI	transcription factor (AP2)	0.04	OrthoFinder output from all 47 species
MA_86195g0010	PLT2	transcription factor (AP2)	0.03	OrthoFinder output from all 47 species
Msp_g28024	BBM	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Msp_g32091	No alias	AP2-type transcription factor *(WRI/AIL) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g28976	No alias	AP2-type transcription factor *(WRI/AIL) & original...	0.04	OrthoFinder output from all 47 species
Ore_g04250	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g15320	AP2, FLO2, FL1	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019681	AP2, FLO2, FL1	not classified & original description: CDS=1-681	0.03	OrthoFinder output from all 47 species
Sam_g09902	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g37210	No alias	AP2-type transcription factor *(WRI/AIL) & original...	0.03	OrthoFinder output from all 47 species
Solyc03g044300.3.1	AP2, FLO2, FL1,...	transcription factor (AP2)	0.02	OrthoFinder output from all 47 species
Solyc06g075510.4.1	RAP2.7, TOE1,...	transcription factor (AP2)	0.05	OrthoFinder output from all 47 species
Solyc11g072600.3.1	RAP2.7, TOE1,...	transcription factor (AP2)	0.05	OrthoFinder output from all 47 species
Zm00001e000558_P003	Zm00001e000558	transcription factor (AP2)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	142	191

External Links

No external refs found!

Solyc09g007260.4.1 (RAP2.7, TOE1, Solyc09g007260)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation