Solyc08g082880.4.1 (Solyc08g082880)


Aliases : Solyc08g082880

Description : no hits & (original description: none)


Gene families : OG0005774 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005774_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g082880.4.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g20150.1 LOC_Os07g20150 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g25329 No alias component *(mS22) of small mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sam_g11854 No alias component *(mS22) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Spa_g23049 No alias component *(mS22) of small mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006412 translation IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR015324 Ribosomal_Rsm22-like 438 502
IPR015324 Ribosomal_Rsm22-like 110 363
No external refs found!