Solyc08g078600.3.1 (Solyc08g078600)

Aliases : Solyc08g078600

Description : small subunit of TFIIIf transcription factor complex

Gene families : OG0006193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006193_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g078600.3.1

Target	Alias	Description	ECC score	Gene Family Method
AT5G49530	No alias	SIN-like family protein	0.03	OrthoFinder output from all 47 species
Aspi01Gene24613.t1	Aspi01Gene24613	small subunit *(NRPC15) of TFIIIf transcription factor...	0.03	OrthoFinder output from all 47 species
Ceric.13G028000.1	Ceric.13G028000	small subunit *(NRPC15) of TFIIIf transcription factor...	0.03	OrthoFinder output from all 47 species
Cre10.g454650	No alias	RNA biosynthesis.RNA polymerase III-dependent...	0.01	OrthoFinder output from all 47 species
Dcu_g03047	No alias	small subunit *(NRPC15) of TFIIIf transcription factor...	0.03	OrthoFinder output from all 47 species
Gb_35421	No alias	small subunit of TFIIIf transcription factor complex	0.03	OrthoFinder output from all 47 species
LOC_Os08g16780.1	LOC_Os08g16780	small subunit of TFIIIf transcription factor complex	0.08	OrthoFinder output from all 47 species
Mp1g02710.1	No alias	small subunit of TFIIIf transcription factor complex	0.04	OrthoFinder output from all 47 species
Ore_g40949	No alias	small subunit *(NRPC15) of TFIIIf transcription factor...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006886	RNA_pol_III_Rpc5	90	471

External Links

No external refs found!

Solyc08g078600.3.1 (Solyc08g078600)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation