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  5. Solyc08g075910.1.1

Solyc08g075910.1.1 (RHC1A, Solyc08g075910)


Aliases : RHC1A, Solyc08g075910

Description : Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana (sp|o22197|rhc1a_arath : 191.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g075910.1.1

Target Alias Description ECC score Gene Family Method Actions
AT1G26800 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g088761 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04007 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aev_g44528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04416 RHC1A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g09386 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g10356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g62505 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13479 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dac_g21770 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g21809 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g05901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62548 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012286 No alias not classified & original description: CDS=1-1674 0.04 OrthoFinder output from all 47 species
Sam_g09915 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g05316 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g21642 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Tin_g23873 No alias RING-H2-class BTL-subclass E3 ubiquiTin ligase &... 0.03 OrthoFinder output from all 47 species
Zm00001e010857_P001 Zm00001e010857 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 174 216
IPR039525 RNF126-like_zinc-ribbon 7 37
No external refs found!