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  5. Solyc08g068820.3.1

Solyc08g068820.3.1 (Solyc08g068820)


Aliases : Solyc08g068820

Description : C3H zinc finger transcription factor


Gene families : OG0006925 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006925_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g068820.3.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Adi_g022635 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ceric.11G092700.1 Ceric.11G092700 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Dac_g23170 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Dcu_g14585 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Mp7g19570.1 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e016101_P001 Zm00001e016101 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR041367 Znf-CCCH_4 146 166
IPR000467 G_patch_dom 296 338
No external refs found!