1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g068665.1.1

Solyc08g068665.1.1 (emb1075, Solyc08g068665)


Aliases : emb1075, Solyc08g068665

Description : Histidine decarboxylase OS=Solanum lycopersicum (sp|p54772|dchs_sollc : 603.0)


Gene families : OG0002528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002528_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g068665.1.1
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
Aev_g11502 emb1075 serine decarboxylase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g31163 emb1075 serine decarboxylase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22218 emb1075 serine decarboxylase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17891 emb1075 serine decarboxylase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0201.g057604 emb1075 not classified & original description: CDS=1-1401 0.04 OrthoFinder output from all 47 species
LOC_Os04g04640.1 emb1075, LOC_Os04g04640 Serine decarboxylase 3 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Nbi_g06674 emb1075 serine decarboxylase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g041260.3.1 emb1075, Solyc07g041260 Histidine decarboxylase OS=Solanum lycopersicum... 0.01 OrthoFinder output from all 47 species
Solyc08g006740.3.1 emb1075, Solyc08g006740 Histidine decarboxylase OS=Solanum lycopersicum... 0.06 OrthoFinder output from all 47 species
Solyc08g006750.4.1 emb1075, Solyc08g006750 Histidine decarboxylase OS=Solanum lycopersicum... 0.03 OrthoFinder output from all 47 species
Solyc08g016770.4.1 emb1075, Solyc08g016770 Histidine decarboxylase OS=Solanum lycopersicum... 0.04 OrthoFinder output from all 47 species
Solyc08g066240.3.1 emb1075, Solyc08g066240 Histidine decarboxylase OS=Solanum lycopersicum... 0.04 OrthoFinder output from all 47 species
Spa_g56020 emb1075 serine decarboxylase & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016831 carboxy-lyase activity IEA Interproscan
BP GO:0019752 carboxylic acid metabolic process IEA Interproscan
MF GO:0030170 pyridoxal phosphate binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR002129 PyrdxlP-dep_de-COase 164 376
No external refs found!