Solyc08g029220.3.1 (Solyc08g029220)


Aliases : Solyc08g029220

Description : no hits & (original description: none)


Gene families : OG0000255 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000255_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g029220.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00055400 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT2G05230 No alias DNAJ heat shock N-terminal domain-containing protein 0.03 OrthoFinder output from all 47 species
AT2G05250 No alias DNAJ heat shock N-terminal domain-containing protein 0.03 OrthoFinder output from all 47 species
AT3G04980 No alias DNAJ heat shock N-terminal domain-containing protein 0.07 OrthoFinder output from all 47 species
AT5G18750 No alias DNAJ heat shock N-terminal domain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g015298 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015686 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11765 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g13721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14745 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g02695 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g10067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14803 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15964 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g40019 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g50827 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28270.t1 Aspi01Gene28270 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene33331.t1 Aspi01Gene33331 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g008106 No alias not classified & original description: CDS=1-1914 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023718 No alias not classified & original description: CDS=66-2393 0.03 OrthoFinder output from all 47 species
Cba_g02654 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z097000.1 Ceric.1Z097000 not classified & original description: pacid=50640979... 0.03 OrthoFinder output from all 47 species
Ceric.32G008500.1 Ceric.32G008500 not classified & original description: pacid=50597752... 0.02 OrthoFinder output from all 47 species
Dcu_g07712 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g46032 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03863 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04806 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12612 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27141 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01017824001 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01021980001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01030061001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_17193 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os01g27740.3 LOC_Os01g27740 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g30620.3 LOC_Os02g30620 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g31940.1 LOC_Os04g31940 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g34440.1 LOC_Os06g34440 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g19008 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g53942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10434613g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_96489g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp1g27530.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g25499 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g02424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02463 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g42147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06588 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03986 No alias chaperone component *(SDJ) of SUVH-SDJ methylation... 0.02 OrthoFinder output from all 47 species
Sam_g11857 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g50190 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g06089 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g17540 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18706 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008360_P001 Zm00001e008360 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e017660_P001 Zm00001e017660 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e025632_P001 Zm00001e025632 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e025633_P001 Zm00001e025633 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e028433_P001 Zm00001e028433 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e036676_P001 Zm00001e036676 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR024593 DUF3444 503 709
IPR001623 DnaJ_domain 67 128
No external refs found!