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  5. Solyc08g008630.4.1

Solyc08g008630.4.1 (Solyc08g008630)


Aliases : Solyc08g008630

Description : Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica (sp|c7au21|d27_orysj : 144.0)


Gene families : OG0001572 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001572_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g008630.4.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00255680 evm_27.TU.AmTr_v1... Beta-carotene isomerase D27, chloroplastic... 0.09 OrthoFinder output from all 47 species
AMTR_s00264p00017830 evm_27.TU.AmTr_v1... Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.02 OrthoFinder output from all 47 species
AT1G64680 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.1 OrthoFinder output from all 47 species
Adi_g033681 No alias carotenoid isomerase *(DWARF27) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g02991 No alias carotenoid isomerase *(DWARF27) & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g49501 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06641 No alias carotenoid isomerase *(DWARF27) & original description: none 0.11 OrthoFinder output from all 47 species
Ala_g11103 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Als_g00455 No alias carotenoid isomerase *(DWARF27) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g06285 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g31538 No alias carotenoid isomerase *(DWARF27) & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g13955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19690 No alias carotenoid isomerase *(DWARF27) & original description: none 0.11 OrthoFinder output from all 47 species
Aspi01Gene11607.t1 Aspi01Gene11607 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0386.g067568 No alias not classified & original description: CDS=62-952 0.04 OrthoFinder output from all 47 species
Cba_g00750 No alias carotenoid isomerase *(DWARF27) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G115700.1 Ceric.02G115700 carotenoid isomerase *(DWARF27) & original description:... 0.06 OrthoFinder output from all 47 species
Dcu_g02296 No alias carotenoid isomerase *(DWARF27) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g12391 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g04481 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01019663001 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.06 OrthoFinder output from all 47 species
Gb_18729 No alias carotenoid isomerase (DWARF27) 0.05 OrthoFinder output from all 47 species
LOC_Os08g02210.2 LOC_Os08g02210 Beta-carotene isomerase D27, chloroplastic... 0.09 OrthoFinder output from all 47 species
Lfl_g11491 No alias carotenoid isomerase *(DWARF27) & original description: none 0.1 OrthoFinder output from all 47 species
Lfl_g13325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_167711g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp6g01750.1 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.02 OrthoFinder output from all 47 species
Msp_g11015 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g11577 No alias carotenoid isomerase *(DWARF27) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g26733 No alias carotenoid isomerase *(DWARF27) & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g19910 No alias carotenoid isomerase *(DWARF27) & original description: none 0.09 OrthoFinder output from all 47 species
Pir_g09207 No alias carotenoid isomerase *(DWARF27) & original description: none 0.1 OrthoFinder output from all 47 species
Pnu_g26521 No alias carotenoid isomerase *(DWARF27) & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g62487 No alias carotenoid isomerase *(DWARF27) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017141 No alias carotenoid isomerase *(DWARF27) & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g06073 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g05404 No alias carotenoid isomerase *(DWARF27) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g28773 No alias carotenoid isomerase *(DWARF27) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e029191_P001 Zm00001e029191 Beta-carotene isomerase D27, chloroplastic... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR025114 D27-like_C 157 239
No external refs found!