1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g005670.2.1

Solyc08g005670.2.1 (Solyc08g005670)


Aliases : Solyc08g005670

Description : Beta-phellandrene synthase (neryl-diphosphate-cyclizing), chloroplastic OS=Solanum lycopersicum (sp|c1k5m3|phs1_sollc : 351.0)


Gene families : OG0000661 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000661_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g005670.2.1
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
Aop_g64876 CPS, ATCPS1,... EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g71568 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g25280 KS, KS1, ATKS1, ATKS, GA2 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g29132 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g29133 CPS, ATCPS1,... EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g39808 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g43202 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08902 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10734 KS, KS1, ATKS1, ATKS, GA2 EC_5.5 intramolecular lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g50437 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036724001 KS, KS1, ATKS1, ATKS, GA2 Phytohormones.gibberellin.synthesis.ent-kaurene synthase 0.03 OrthoFinder output from all 47 species
Gb_00720 CPS, ATCPS1,... mono-/sesquiterpene-/diterpene synthase. ent-copalyl... 0.03 OrthoFinder output from all 47 species
Gb_04666 CPS, ATCPS1,... ent-copalyl diphosphate synthase 0.04 OrthoFinder output from all 47 species
Gb_06621 CPS, ATCPS1,... mono-/sesquiterpene-/diterpene synthase. ent-copalyl... 0.05 OrthoFinder output from all 47 species
Gb_13692 TPS02 mono-/sesquiterpene-/diterpene synthase 0.04 OrthoFinder output from all 47 species
Gb_24873 CPS, ATCPS1,... mono-/sesquiterpene-/diterpene synthase 0.03 OrthoFinder output from all 47 species
Gb_25663 TPS03, ATTPS03 mono-/sesquiterpene-/diterpene synthase 0.02 OrthoFinder output from all 47 species
Gb_35203 CPS, ATCPS1,... mono-/sesquiterpene-/diterpene synthase. ent-copalyl... 0.04 OrthoFinder output from all 47 species
Gb_38471 KS, KS1, ATKS1, ATKS, GA2 Alpha-bisabolene synthase OS=Abies grandis... 0.03 OrthoFinder output from all 47 species
Gb_38696 TPS02 mono-/sesquiterpene-/diterpene synthase 0.02 OrthoFinder output from all 47 species
Gb_38829 TPS02 mono-/sesquiterpene-/diterpene synthase 0.06 OrthoFinder output from all 47 species
Gb_39995 CPS, ATCPS1,... mono-/sesquiterpene-/diterpene synthase. ent-copalyl... 0.05 OrthoFinder output from all 47 species
LOC_Os02g36140.2 KS, KS1, ATKS1,... ent-kaurene synthase 0.04 OrthoFinder output from all 47 species
LOC_Os02g36210.1 CPS, ATCPS1,... ent-copalyl diphosphate synthase 0.03 OrthoFinder output from all 47 species
LOC_Os04g09900.1 CPS, ATCPS1,... ent-copalyl diphosphate synthase 0.05 OrthoFinder output from all 47 species
LOC_Os04g10060.1 KS, KS1, ATKS1,... ent-kaurene synthase 0.05 OrthoFinder output from all 47 species
LOC_Os11g28530.2 KS, KS1, ATKS1,... ent-kaurene synthase 0.03 OrthoFinder output from all 47 species
Len_g35906 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10378945g0010 CPS, ATCPS1,... Alpha-bisabolene synthase OS=Abies grandis... 0.05 OrthoFinder output from all 47 species
MA_10433916g0010 CPS, ATCPS1,... mono-/sesquiterpene-/diterpene synthase 0.04 OrthoFinder output from all 47 species
MA_10435309g0010 CPS, ATCPS1,... mono-/sesquiterpene-/diterpene synthase. ent-copalyl... 0.06 OrthoFinder output from all 47 species
MA_10435706g0010 TPS03, ATTPS03 mono-/sesquiterpene-/diterpene synthase 0.03 OrthoFinder output from all 47 species
MA_10435715g0010 TPS02 mono-/sesquiterpene-/diterpene synthase 0.04 OrthoFinder output from all 47 species
MA_7940170g0010 CPS, ATCPS1,... Alpha-bisabolene synthase OS=Abies grandis... 0.05 OrthoFinder output from all 47 species
MA_86213g0010 CPS, ATCPS1,... mono-/sesquiterpene-/diterpene synthase. ent-copalyl... 0.05 OrthoFinder output from all 47 species
Mp2g07200.1 CPS, ATCPS1,... ent-copalyl diphosphate synthase. ent-kaurene synthase 0.02 OrthoFinder output from all 47 species
Mp2g24640.1 CPS, ATCPS1,... ent-copalyl diphosphate synthase 0.02 OrthoFinder output from all 47 species
Msp_g33503 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g20973 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g14979 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g29991 CPS, ATCPS1,... EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g29992 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35982 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37904 CPS, ATCPS1,... EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37905 CPS, ATCPS1,... EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38612 KS, KS1, ATKS1, ATKS, GA2 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38613 KS, KS1, ATKS1, ATKS, GA2 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g06932 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63758 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25469 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g49443 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59339 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52511 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49249 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g28857 CPS, ATCPS1,... EC_5.5 intramolecular lyase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002123_P001 CPS, ATCPS1,... ent-copalyl diphosphate synthase 0.04 OrthoFinder output from all 47 species
Zm00001e006972_P001 KS, KS1, ATKS1,... mono-/sesquiterpene-/diterpene synthase. ent-kaurene synthase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
MF GO:0010333 terpene synthase activity IEA Interproscan
MF GO:0016829 lyase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR005630 Terpene_synthase_metal-bd 5 115
No external refs found!