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Aliases : Solyc07g063220
Description : Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana (sp|q84jr3|pp334_arath : 416.0)
Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc07g063220.4.1 | |
| Cluster | HCCA: Cluster_19 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00095p00019470 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g80270,... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G02370 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT1G60770 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.08 | OrthoFinder output from all 47 species | |
| AT1G80270 | PPR596 | PENTATRICOPEPTIDE REPEAT 596 | 0.07 | OrthoFinder output from all 47 species | |
| AT4G01990 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.07 | OrthoFinder output from all 47 species | |
| AT4G02820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.17G065300.1 | Ceric.17G065300 | RNA editing factor *(POCO) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g01745 | PPR596 | RNA editing factor *(POCO) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01006654001 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01031246001 | No alias | Pentatricopeptide repeat-containing protein At4g01990,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01033642001 | No alias | Pentatricopeptide repeat-containing protein At1g80270,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_20238 | No alias | RNA editing factor (POCO) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_27873 | No alias | RNA editing factor (POCO) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os12g07260.1 | PPR596, LOC_Os12g07260 | RNA editing factor (POCO) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os12g34340.1 | LOC_Os12g34340 | Pentatricopeptide repeat-containing protein At4g02820,... | 0.06 | OrthoFinder output from all 47 species | |
| MA_100637g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.02 | OrthoFinder output from all 47 species | |
| MA_492314g0010 | No alias | RNA editing factor (POCO) | 0.04 | OrthoFinder output from all 47 species | |
| MA_7558g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.03 | OrthoFinder output from all 47 species | |
| MA_94340g0010 | No alias | Pentatricopeptide repeat-containing protein At1g60770... | 0.02 | OrthoFinder output from all 47 species | |
| Smo406783 | PPR596 | Pentatricopeptide repeat-containing protein At1g80270,... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g11271 | No alias | RNA editing factor *(POCO) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e007372_P001 | Zm00001e007372 | Pentatricopeptide repeat-containing protein At1g02150... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e025470_P001 | PPR596, Zm00001e025470 | RNA editing factor (POCO) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e026211_P002 | Zm00001e026211 | Pentatricopeptide repeat-containing protein At1g02370,... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e036620_P001 | Zm00001e036620 | Pentatricopeptide repeat-containing protein At1g60770... | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| MF | GO:0070569 | uridylyltransferase activity | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| No external refs found! |