Solyc07g061900.3.1 (RPL4, Solyc07g061900)

Aliases : RPL4, Solyc07g061900

Description : component psRPL4 of large ribosomal subunit proteome

Gene families : OG0007896 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007896_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g061900.3.1
Cluster	HCCA: Cluster_133

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00221060	RPL4,...	Protein biosynthesis.organelle translation...	0.11	OrthoFinder output from all 47 species
AT1G07320	RPL4	ribosomal protein L4	0.33	OrthoFinder output from all 47 species
Adi_g078975	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g05983	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Als_g20889	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.14	OrthoFinder output from all 47 species
Aob_g13415	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aop_g05120	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Aspi01Gene15325.t1	RPL4, Aspi01Gene15325	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Azfi_s0056.g034220	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Cba_g34049	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.09G057300.1	RPL4, Ceric.09G057300	component *(uL4c) of large plastid ribosomal-subunit...	0.27	OrthoFinder output from all 47 species
Cre11.g479500	RPL4	Protein biosynthesis.organelle translation...	0.23	OrthoFinder output from all 47 species
Dac_g21787	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Dcu_g06106	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Dde_g06392	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Ehy_g02216	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01024788001	RPL4	50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum	0.21	OrthoFinder output from all 47 species
Gb_03469	RPL4	component psRPL4 of large ribosomal subunit proteome	0.18	OrthoFinder output from all 47 species
LOC_Os03g15870.1	RPL4, LOC_Os03g15870	component psRPL4 of large ribosomal subunit proteome	0.3	OrthoFinder output from all 47 species
Len_g13257	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Lfl_g01030	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
MA_2315568g0010	RPL4	50S ribosomal protein L4, chloroplastic OS=Nicotiana...	0.09	OrthoFinder output from all 47 species
MA_9845329g0010	RPL4	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp1g18940.1	RPL4	component psRPL4 of large ribosomal subunit proteome	0.34	OrthoFinder output from all 47 species
Msp_g19825	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Nbi_g14226	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ore_g08496	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pir_g19924	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pnu_g10727	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ppi_g15929	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Spa_g08728	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.19	OrthoFinder output from all 47 species
Tin_g24110	RPL4	component *(uL4c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Zm00001e001165_P001	RPL4, Zm00001e001165	component psRPL4 of large ribosomal subunit proteome	0.33	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002136	Ribosomal_L4/L1e	77	256

External Links

No external refs found!

Solyc07g061900.3.1 (RPL4, Solyc07g061900)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation