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  5. Solyc07g056660.4.1

Solyc07g056660.4.1 (EMB2754, Solyc07g056660)


Aliases : EMB2754, Solyc07g056660

Description : HOPS-specific component VPS39 of HOPS/CORVET membrane tethering complexes


Gene families : OG0004665 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004665_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g056660.4.1

Target Alias Description ECC score Gene Family Method Actions
AT4G36630 EMB2754 Vacuolar sorting protein 39 0.08 OrthoFinder output from all 47 species
Adi_g057736 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Aev_g03386 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species
Als_g01957 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Aop_g11031 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Cba_g07929 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Cre06.g278124 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g39227 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species
GSVIVT01018960001 EMB2754 Vesicle trafficking.target membrane... 0.04 OrthoFinder output from all 47 species
Gb_04249 EMB2754 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Lfl_g21335 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
MA_5487114g0010 EMB2754 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Zm00001e005474_P001 EMB2754, Zm00001e005474 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
MF GO:0016755 aminoacyltransferase activity IEP HCCA
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
BP GO:0046937 phytochelatin metabolic process IEP HCCA
BP GO:0046938 phytochelatin biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 879 987
IPR000547 Clathrin_H-chain/VPS_repeat 638 769
IPR001180 CNH_dom 115 286
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 508 615
No external refs found!