Solyc07g055320.4.1 (VAR2, FTSH2, Solyc07g055320)

Aliases : VAR2, FTSH2, Solyc07g055320

Description : component FtsH1|2|5|6|8 of FtsH plastidial protease complexes

Gene families : OG0001722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001722_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g055320.4.1
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00106p00108310	VAR2, FTSH2,...	Protein degradation.peptidase families.metallopeptidase...	0.05	OrthoFinder output from all 47 species
AT1G06430	FTSH8	FTSH protease 8	0.02	OrthoFinder output from all 47 species
Adi_g087056	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.03	OrthoFinder output from all 47 species
Adi_g087057	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.04	OrthoFinder output from all 47 species
Adi_g114970	VAR2, FTSH2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g02360	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.07	OrthoFinder output from all 47 species
Ala_g14174	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.04	OrthoFinder output from all 47 species
Als_g07586	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.09	OrthoFinder output from all 47 species
Als_g20560	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.07	OrthoFinder output from all 47 species
Aob_g10132	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g17362	VAR2, FTSH2	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.09	OrthoFinder output from all 47 species
Aop_g14163	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.05	OrthoFinder output from all 47 species
Aspi01Gene12384.t1	FTSH8, Aspi01Gene12384	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.04	OrthoFinder output from all 47 species
Azfi_s0022.g016135	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.03	OrthoFinder output from all 47 species
Cba_g13333	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.03	OrthoFinder output from all 47 species
Cba_g75374	VAR2, FTSH2	EXECUTER-cleavage protease *(FtsH2) & original description: none	0.06	OrthoFinder output from all 47 species
Ceric.03G093200.1	FTSH8, Ceric.03G093200	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.07	OrthoFinder output from all 47 species
Ceric.22G054100.1	FTSH8, Ceric.22G054100	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021127.121	FTSH5, VAR1	ATP-dependent zinc metalloprotease FTSH 5, chloroplastic...	0.02	OrthoFinder output from all 47 species
Cre09.g393950	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.01	OrthoFinder output from all 47 species
Cre17.g720050	FTSH8	Protein degradation.peptidase families.metallopeptidase...	0.06	OrthoFinder output from all 47 species
Dac_g10534	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.06	OrthoFinder output from all 47 species
Dcu_g13134	VAR2, FTSH2	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.09	OrthoFinder output from all 47 species
Dcu_g44210	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.03	OrthoFinder output from all 47 species
Dde_g07705	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g23743	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.12	OrthoFinder output from all 47 species
Ehy_g03938	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.07	OrthoFinder output from all 47 species
GSVIVT01020760001	VAR2, FTSH2	Protein degradation.peptidase families.metallopeptidase...	0.1	OrthoFinder output from all 47 species
Gb_12830	FTSH8	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.06	OrthoFinder output from all 47 species
LOC_Os06g45820.1	VAR2, FTSH2,...	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.1	OrthoFinder output from all 47 species
Len_g21745	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.11	OrthoFinder output from all 47 species
Len_g44862	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.08	OrthoFinder output from all 47 species
Lfl_g04989	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.09	OrthoFinder output from all 47 species
Mp4g19200.1	VAR2, FTSH2	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.02	OrthoFinder output from all 47 species
Msp_g02086	VAR2, FTSH2	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.12	OrthoFinder output from all 47 species
Nbi_g11426	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.11	OrthoFinder output from all 47 species
Ore_g04179	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g26838	VAR2, FTSH2	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.07	OrthoFinder output from all 47 species
Ore_g45571	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g09681	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.09	OrthoFinder output from all 47 species
Pir_g14965	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g12324	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g01188	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g17712	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008575	FTSH8	not classified & original description: CDS=1-1161	0.02	OrthoFinder output from all 47 species
Sam_g18762	No alias	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.04	OrthoFinder output from all 47 species
Sam_g37450	No alias	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.05	OrthoFinder output from all 47 species
Smo149856	VAR2, FTSH2	Protein degradation.peptidase families.metallopeptidase...	0.03	OrthoFinder output from all 47 species
Spa_g25819	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.05	OrthoFinder output from all 47 species
Tin_g04117	FTSH8	component *(FtsH1/2/5/6/8) of FtsH plastidial protease...	0.09	OrthoFinder output from all 47 species
Zm00001e030358_P003	VAR2, FTSH2,...	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.03	OrthoFinder output from all 47 species
Zm00001e037753_P001	VAR2, FTSH2,...	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0046164	alcohol catabolic process	IEP	HCCA
BP	GO:0046174	polyol catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	HCCA
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	HCCA
BP	GO:0071545	inositol phosphate catabolic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000642	Peptidase_M41	481	670
IPR003959	ATPase_AAA_core	267	398
IPR041569	AAA_lid_3	422	464

External Links

No external refs found!

Solyc07g055320.4.1 (VAR2, FTSH2, Solyc07g055320)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation