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  5. Solyc07g055060.3.1

Solyc07g055060.3.1 (PEPC1, ATPEPC1,...)


Aliases : PEPC1, ATPEPC1, ATPPC1, PPC1, Solyc07g055060

Description : PEP carboxylase


Gene families : OG0000643 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g055060.3.1
Cluster HCCA: "Disabled for neighborhCluster_41

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene14699.t1 ATPPC3, PPC3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28190.t1 PPC2, ATPPC2,... EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Cre16.g673852 PEPC1, ATPEPC1,... Photosynthesis.CAM/C4 photosynthesis.phosphoenolpyruvate... 0.01 OrthoFinder output from all 47 species
Ore_g04525 ATPPC4, PPC4 PEP carboxylase *(PPC) & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g10417 ATPPC3, PPC3 EC_4.1 carbon-carbon lyase & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g10442 PEPC1, ATPEPC1,... EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006099 tricarboxylic acid cycle IEA Interproscan
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEA Interproscan
BP GO:0015977 carbon fixation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR021135 PEP_COase 162 964
No external refs found!