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  5. Solyc07g054950.2.1

Solyc07g054950.2.1 (CYCD6;1, Solyc07g054950)


Aliases : CYCD6;1, Solyc07g054950

Description : cyclin (CYCD)


Gene families : OG0000395 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g054950.2.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT1G70210 CYCD1;1, ATCYCD1;1 CYCLIN D1;1 0.04 OrthoFinder output from all 47 species
AT3G50070 CYCD3;3 CYCLIN D3;3 0.03 OrthoFinder output from all 47 species
AT5G67260 CYCD3;2 CYCLIN D3;2 0.04 OrthoFinder output from all 47 species
Adi_g004785 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g006708 CYCD4;2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110295 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Ala_g05661 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ala_g20231 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.06 OrthoFinder output from all 47 species
Ala_g22032 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Ala_g23134 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Als_g01667 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Als_g11704 ATCYCD2;1, CYCD2;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Als_g12082 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Aop_g12696 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Aop_g31334 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Aop_g35995 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Aop_g68494 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene22554.t1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene39255.t1 ATCYCD2;1,... regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene51365.t1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene60777.t1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene72259.t1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0019.g015178 CYCD4;2 not classified & original description: CDS=139-672 0.03 OrthoFinder output from all 47 species
Azfi_s0064.g035662 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Cba_g00990 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Cba_g03303 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ceric.1Z120100.1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Dac_g16428 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Dcu_g07032 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Dcu_g18290 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Dde_g00543 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Dde_g01468 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ehy_g10860 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01000451001 CYCD6;1 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 OrthoFinder output from all 47 species
GSVIVT01003175001 CYCD3;3 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 OrthoFinder output from all 47 species
Gb_37608 ATCYCD2;1, CYCD2;1 cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
LOC_Os07g37010.1 CYCD6;1, LOC_Os07g37010 cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
LOC_Os09g02360.1 CYCD3;3, LOC_Os09g02360 cyclin (CYCD) 0.02 OrthoFinder output from all 47 species
LOC_Os09g21450.1 CYCD1;1,... cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
LOC_Os12g39830.1 CYCD5;1, LOC_Os12g39830 cyclin (CYCD) 0.05 OrthoFinder output from all 47 species
Len_g00488 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Len_g03800 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Len_g04581 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Len_g12697 ATCYCD2;1, CYCD2;1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55932 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Lfl_g13622 ATCYCD2;1, CYCD2;1 regulatory protein *(CYCD) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
MA_93221g0010 CYCD1;1, ATCYCD1;1 cyclin (CYCD) 0.05 OrthoFinder output from all 47 species
MA_96242g0010 CYCD3, CYCD3;1 cyclin (CYCD) 0.06 OrthoFinder output from all 47 species
Mp8g17230.1 ATCYCD2;1, CYCD2;1 cyclin (CYCD) 0.02 OrthoFinder output from all 47 species
Msp_g02755 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Msp_g06191 CYCD3;2 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Nbi_g07386 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Nbi_g13351 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Nbi_g43541 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ore_g36210 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ppi_g10385 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ppi_g11937 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014749 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020437 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0162.g023971 No alias regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sam_g07890 No alias regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Solyc12g087900.2.1 ATCYCD2;1,... cyclin (CYCD) 0.04 OrthoFinder output from all 47 species
Spa_g06278 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Spa_g11128 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Spa_g47878 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Tin_g46147 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Zm00001e009441_P003 CYCD3, CYCD3;1,... cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
Zm00001e018000_P001 CYCD1;1,... cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
Zm00001e033498_P001 CYCD3;3, Zm00001e033498 cyclin (CYCD) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 150 249
IPR006671 Cyclin_N 24 147
No external refs found!