1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g049380.1.1

Solyc07g049380.1.1 (Solyc07g049380)


Aliases : Solyc07g049380

Description : clathrin assembly protein (AP180)


Gene families : OG0000273 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000273_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g049380.1.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00161520 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
AT4G02650 No alias ENTH/ANTH/VHS superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g011781 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g055261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g34088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06527 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G099900.1 Ceric.04G099900 not classified & original description: pacid=50631667... 0.02 OrthoFinder output from all 47 species
Ceric.06G063000.1 Ceric.06G063000 not classified & original description: pacid=50619221... 0.04 OrthoFinder output from all 47 species
GSVIVT01010864001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 OrthoFinder output from all 47 species
GSVIVT01023714001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
LOC_Os06g48630.1 LOC_Os06g48630 ECA1/2 clathrin coated vesicle adaptor protein 0.06 OrthoFinder output from all 47 species
Nbi_g13944 No alias accessory protein *(PlCALM3) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18995 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g32775 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04608 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0115.g020948 No alias not classified & original description: CDS=2516-4330 0.02 OrthoFinder output from all 47 species
Sam_g14412 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo440070 No alias Putative clathrin assembly protein At4g02650... 0.03 OrthoFinder output from all 47 species
Spa_g39340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001222_P002 Zm00001e001222 component CAP1/ECA4 of TPLATE AP-2 co-adaptor complex 0.05 OrthoFinder output from all 47 species
Zm00001e020079_P003 Zm00001e020079 ECA1/2 clathrin coated vesicle adaptor protein 0.05 OrthoFinder output from all 47 species
Zm00001e030401_P001 Zm00001e030401 ECA1/2 clathrin coated vesicle adaptor protein 0.03 OrthoFinder output from all 47 species
Zm00001e031059_P001 Zm00001e031059 Putative clathrin assembly protein At5g35200... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR011417 ANTH_dom 30 320
No external refs found!