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  5. Solyc07g049210.3.1

Solyc07g049210.3.1 (EBS, Solyc07g049210)


Aliases : EBS, Solyc07g049210

Description : component BAH of BAH-EMF1 Polycomb silencing complex


Gene families : OG0000671 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000671_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g049210.3.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
Ala_g03810 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g25249 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01004809001 EBS Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
LOC_Os09g21770.1 EBS, LOC_Os09g21770 component BAH of BAH-EMF1 Polycomb silencing complex 0.03 OrthoFinder output from all 47 species
Lfl_g06920 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05668 EBS component *(SHL/EBS) of PRC1 complex & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012510 EBS component *(SHL/EBS) of PRC1 complex & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0156.g023635 EBS component *(SHL/EBS) of PRC1 complex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e033007_P001 EBS, Zm00001e033007 component BAH of BAH-EMF1 Polycomb silencing complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001025 BAH_dom 23 135
IPR019787 Znf_PHD-finger 140 188
No external refs found!