1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g047900.3.1

Solyc07g047900.3.1 (Solyc07g047900)


Aliases : Solyc07g047900

Description : Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana (sp|q67xl4|y3544_arath : 119.0)


Gene families : OG0001914 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001914_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g047900.3.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g006647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20985 No alias splicing factor *(CFM9) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11882 No alias splicing factor *(CFM9) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01780 No alias splicing factor *(CFM9) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g18626 No alias splicing factor *(CFM9) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_39033 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.04 OrthoFinder output from all 47 species
Len_g19656 No alias splicing factor *(CFM9) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e040411_P001 Zm00001e040411 Uncharacterized CRM domain-containing protein At3g25440,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 141 225
No external refs found!