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  5. Solyc07g042700.4.1

Solyc07g042700.4.1 (ROS3, Solyc07g042700)


Aliases : ROS3, Solyc07g042700

Description : no hits & (original description: none)


Gene families : OG0003579 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003579_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g042700.4.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT5G58130 ROS3 RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Aop_g25283 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G025100.1 ROS3, Ceric.16G025100 not classified & original description: pacid=50589249... 0.05 OrthoFinder output from all 47 species
Cre14.g633400 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01038350001 ROS3 No description available 0.03 OrthoFinder output from all 47 species
Smo402256 ROS3 No description available 0.04 OrthoFinder output from all 47 species
Zm00001e025337_P001 ROS3, Zm00001e025337 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!