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  5. Solyc07g041650.3.1

Solyc07g041650.3.1 (Solyc07g041650)


Aliases : Solyc07g041650

Description : Exopolygalacturonase (Fragment) OS=Platanus acerifolia (sp|q6h9k0|pglr2_plaac : 305.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 240.1)


Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g041650.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00250890 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.06 OrthoFinder output from all 47 species
AMTR_s00096p00099360 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AT1G23460 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G60590 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G80170 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G26610 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
Als_g14084 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g51935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13455 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g37611 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01028132001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_07779 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 OrthoFinder output from all 47 species
Gb_33196 No alias Polygalacturonase OS=Prunus persica... 0.02 OrthoFinder output from all 47 species
LOC_Os11g14400.1 LOC_Os11g14400 Polygalacturonase OS=Prunus persica... 0.02 OrthoFinder output from all 47 species
MA_10862g0010 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_13282g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.05 OrthoFinder output from all 47 species
MA_754919g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.04 OrthoFinder output from all 47 species
Pir_g17999 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Smo113633 ADPG2, PGAZAT Polygalacturonase ADPG1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc03g116580.4.1 Solyc03g116580 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc08g014560.3.1 Solyc08g014560 Polygalacturonase OS=Prunus persica... 0.05 OrthoFinder output from all 47 species
Zm00001e011814_P002 ADPG2, PGAZAT,... Polygalacturonase OS=Actinidia deliciosa... 0.03 OrthoFinder output from all 47 species
Zm00001e027720_P001 Zm00001e027720 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e036989_P001 Zm00001e036989 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 54 369
No external refs found!