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  5. Solyc07g039200.4.1

Solyc07g039200.4.1 (Solyc07g039200)


Aliases : Solyc07g039200

Description : WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana (sp|o22468|msi2_arath : 121.0)


Gene families : OG0004386 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004386_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g039200.4.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00164390 evm_27.TU.AmTr_v1... Histone-binding protein MSI1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g008316 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Aev_g03870 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Aop_g05856 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Azfi_s0043.g026948 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001493.9 No alias No description available 0.05 OrthoFinder output from all 47 species
Cre17.g724850 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Dac_g03285 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Ehy_g08357 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
GSVIVT01015210001 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.12 OrthoFinder output from all 47 species
Gb_37351 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os12g03822.1 LOC_Os12g03822 Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
MA_10425957g0010 No alias Histone-binding protein MSI1 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Mp4g21540.1 No alias Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.09 OrthoFinder output from all 47 species
Pp3c12_16950V3.1 Pp3c12_16950 Transducin family protein / WD-40 repeat family protein 0.01 OrthoFinder output from all 47 species
Sam_g10251 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Spa_g11514 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Zm00001e027495_P001 Zm00001e027495 WD-40 repeat-containing protein MSI4 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004526 ribonuclease P activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 46 111
IPR001680 WD40_repeat 257 292
IPR001680 WD40_repeat 348 383
No external refs found!