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  5. Solyc07g032100.3.1

Solyc07g032100.3.1 (Solyc07g032100)


Aliases : Solyc07g032100

Description : subunit alpha of coat protein complex


Gene families : OG0001943 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001943_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g032100.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00220200 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 OrthoFinder output from all 47 species
AT1G62020 No alias Coatomer, alpha subunit 0.18 OrthoFinder output from all 47 species
AT2G21390 No alias Coatomer, alpha subunit 0.21 OrthoFinder output from all 47 species
Adi_g019461 No alias subunit alpha of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Adi_g055850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117171 No alias subunit alpha of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Aev_g07330 No alias subunit alpha of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Ala_g08580 No alias subunit alpha of coat protein complex & original... 0.09 OrthoFinder output from all 47 species
Ala_g18597 No alias subunit alpha of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Als_g16600 No alias subunit alpha of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Aop_g37693 No alias subunit alpha of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0157.g053779 No alias subunit alpha of coat protein complex & original... 0.1 OrthoFinder output from all 47 species
Ceric.26G051100.1 Ceric.26G051100 subunit alpha of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Ceric.27G001800.1 Ceric.27G001800 subunit alpha of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.37G062500.1 Ceric.37G062500 subunit alpha of coat protein complex & original... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.152 No alias Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Cre13.g565850 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 OrthoFinder output from all 47 species
Dcu_g07776 No alias subunit alpha of coat protein complex & original... 0.08 OrthoFinder output from all 47 species
Dcu_g12109 No alias subunit alpha of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Dde_g09955 No alias subunit alpha of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Ehy_g08572 No alias subunit alpha of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Ehy_g12790 No alias subunit alpha of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01009813001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.12 OrthoFinder output from all 47 species
Gb_09624 No alias subunit alpha of coat protein complex 0.1 OrthoFinder output from all 47 species
Gb_15817 No alias subunit alpha of coat protein complex 0.08 OrthoFinder output from all 47 species
LOC_Os03g50340.1 LOC_Os03g50340 subunit alpha of coat protein complex 0.14 OrthoFinder output from all 47 species
LOC_Os03g50350.1 LOC_Os03g50350 subunit alpha of coat protein complex 0.14 OrthoFinder output from all 47 species
LOC_Os09g04110.1 LOC_Os09g04110 subunit alpha of coat protein complex 0.12 OrthoFinder output from all 47 species
Len_g20642 No alias subunit alpha of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Lfl_g09317 No alias subunit alpha of coat protein complex & original... 0.08 OrthoFinder output from all 47 species
Lfl_g22708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428405g0010 No alias subunit alpha of coat protein complex 0.05 OrthoFinder output from all 47 species
MA_10429054g0020 No alias subunit alpha of coat protein complex 0.07 OrthoFinder output from all 47 species
MA_10429054g0030 No alias Coatomer subunit alpha-1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp3g00050.1 No alias subunit alpha of coat protein complex 0.15 OrthoFinder output from all 47 species
Msp_g03578 No alias subunit alpha of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Nbi_g06320 No alias subunit alpha of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Nbi_g07935 No alias subunit alpha of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Ore_g15161 No alias subunit alpha of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Ore_g19289 No alias subunit alpha of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Ppi_g17747 No alias subunit alpha of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022603 No alias subunit alpha of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Sam_g07198 No alias subunit alpha of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Smo77651 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
Smo85610 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 OrthoFinder output from all 47 species
Spa_g25852 No alias subunit alpha of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Tin_g06133 No alias subunit alpha of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e005441_P001 Zm00001e005441 subunit alpha of coat protein complex 0.13 OrthoFinder output from all 47 species
Zm00001e012192_P001 Zm00001e012192 subunit alpha of coat protein complex 0.15 OrthoFinder output from all 47 species
Zm00001e016505_P002 Zm00001e016505 subunit alpha of coat protein complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
CC GO:0000145 exocyst IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 341 768
IPR001680 WD40_repeat 84 121
IPR001680 WD40_repeat 198 231
IPR001680 WD40_repeat 241 276
IPR001680 WD40_repeat 45 79
IPR001680 WD40_repeat 126 163
IPR010714 Coatomer_asu_C 815 1219
No external refs found!