Solyc07g008880.3.1 (EMB33, SUS2, EMB177,...)

Aliases : EMB33, SUS2, EMB177, EMB14, Solyc07g008880

Description : protein factor PRPF8/SUS2 of U5 small nuclear ribonucleoprotein particle (snRNP)

Gene families : OG0003463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003463_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g008880.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00046p00089870	EMB33, SUS2,...	RNA processing.RNA splicing.U2-type-intron-specific...	0.13	OrthoFinder output from all 47 species
AT1G80070	EMB33, SUS2,...	Pre-mRNA-processing-splicing factor	0.14	OrthoFinder output from all 47 species
Ala_g15277	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.07	OrthoFinder output from all 47 species
Als_g19020	EMB33, SUS2,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g29416	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.06	OrthoFinder output from all 47 species
Aob_g16557	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.05	OrthoFinder output from all 47 species
Aop_g13684	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.08	OrthoFinder output from all 47 species
Aspi01Gene05886.t1	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.03	OrthoFinder output from all 47 species
Cba_g15408	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.04	OrthoFinder output from all 47 species
Ceric.07G006500.1	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000093.137	EMB33, SUS2,...	RNA processing.RNA splicing.U2-type-intron-specific...	0.07	OrthoFinder output from all 47 species
Cre01.g016050	EMB33, SUS2,...	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
Dac_g10090	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.04	OrthoFinder output from all 47 species
Dcu_g02064	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.13	OrthoFinder output from all 47 species
Dde_g02414	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.03	OrthoFinder output from all 47 species
GSVIVT01017346001	EMB33, SUS2,...	RNA processing.RNA splicing.U2-type-intron-specific...	0.13	OrthoFinder output from all 47 species
Gb_00344	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.16	OrthoFinder output from all 47 species
LOC_Os05g07050.1	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.1	OrthoFinder output from all 47 species
LOC_Os06g07080.1	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.11	OrthoFinder output from all 47 species
Len_g05452	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.08	OrthoFinder output from all 47 species
Len_g21117	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.03	OrthoFinder output from all 47 species
Len_g31288	EMB33, SUS2,...	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Len_g44858	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.06	OrthoFinder output from all 47 species
Lfl_g02476	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.1	OrthoFinder output from all 47 species
MA_7388g0020	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.1	OrthoFinder output from all 47 species
Mp1g12380.1	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.07	OrthoFinder output from all 47 species
Msp_g13516	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.06	OrthoFinder output from all 47 species
Nbi_g04483	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.02	OrthoFinder output from all 47 species
Ore_g37212	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004862	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.05	OrthoFinder output from all 47 species
Sam_g18054	No alias	protein factor *(PRPF8/SUS2) of MAC...	0.02	OrthoFinder output from all 47 species
Sam_g37843	No alias	protein factor *(PRPF8/SUS2) of MAC...	0.03	OrthoFinder output from all 47 species
Smo173603	EMB33, SUS2,...	RNA processing.RNA splicing.U2-type-intron-specific...	0.1	OrthoFinder output from all 47 species
Spa_g12840	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.09	OrthoFinder output from all 47 species
Tin_g07648	EMB33, SUS2,...	protein factor *(PRPF8/SUS2) of MAC...	0.06	OrthoFinder output from all 47 species
Zm00001e030094_P003	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.09	OrthoFinder output from all 47 species
Zm00001e036397_P001	EMB33, SUS2,...	protein factor PRPF8/SUS2 of U5 small nuclear...	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0017069	snRNA binding	None	Extended
MF	GO:0017070	U6 snRNA binding	IEA	Interproscan
MF	GO:0030623	U5 snRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	HCCA
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012592	PROCN	444	849
IPR019581	Prp8_U5-snRNA-bd	1259	1392
IPR021983	PRP8_domainIV	1809	2038
IPR012591	PRO8NT	107	258
IPR019580	Prp8_U6-snRNA-bd	1491	1649
IPR000555	JAMM/MPN+_dom	2150	2248
IPR012984	PROCT	2261	2381
IPR019582	RRM_spliceosomal_PrP8	1034	1124

External Links

No external refs found!

Solyc07g008880.3.1 (EMB33, SUS2, EMB177,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation