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  5. Solyc07g008730.2.1

Solyc07g008730.2.1 (PRHA, Solyc07g008730)


Aliases : PRHA, Solyc07g008730

Description : transcription factor (PHD)


Gene families : OG0002217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002217_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g008730.2.1

Target Alias Description ECC score Gene Family Method Actions
AT4G29940 PRHA pathogenesis related homeodomain protein A 0.04 OrthoFinder output from all 47 species
Ala_g06710 PRHA PHD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G007000.1 PRHA, Ceric.30G007000 PHD-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g01709 PRHA PHD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e019808_P001 HAT3.1, Zm00001e019808 transcription factor (PHD) 0.07 OrthoFinder output from all 47 species
Zm00001e029056_P003 HAT3.1, Zm00001e029056 transcription factor (PHD) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 219 274
IPR001356 Homeobox_dom 491 535
No external refs found!